1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgtttccactggttcctacttgcttctgtatgctatatctggttgtaggatgttgtacacatatatgctttttatgcaaaattcattttctgattccattattctttttaataatgctctaaactgtttgattcactcttggcttgtggttcatggtgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGACAACAGTAGTTAGACAATGCTTAAATCAAGAGCTTAGCAAG
species | Vitis vinifera |
transcript | Vv18s0001g13280.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGGACAGAGCACTTCTTG CACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGAEST: gi|349813259|gb|FQ411499.1|FQ411499
genomic: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTGgtgtgtttcc ... tgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGA
EST: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTG CACATGCCAACCTCCCTAGCTGTTCAGEST: gi|110713521|gb|EE089516.1|EE089516
genomic: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTGgtgtgtttcc ... tgtatatcagCACATGCCAACCTCCCTAGCTGTTCAG
EST: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTG CACATGCCAACCTCCCTAGCTGTTCAGCAATGGGAAGGCTGATACAACAGAEST: gi|110718275|gb|EE094924.1|EE094924
genomic: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTGgtgtgtttcc ... tgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGA
EST: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTG CACATGCCACCCTCCCTAGCTGTTCNAGCA-TGGAAAAGCTGATACAACAGEST: gi|349807500|gb|FQ401493.1|FQ401493
genomic: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTGgtgtgtttcc ... tgtatatcagCACATGCCAACCTCCCTAGCTGTTC-AGCAATGGAAAGGCTGATACAACAG
EST: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTG CACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAAGCTGATACAACEST: gi|110712714|gb|EE088002.1|EE088002
genomic: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTGgtgtgtttcc ... tgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAAC
EST: CCTGGAGTATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTG CACATGCCAACCTCCCTAGCTGTTCAGCAATGGGAAGGCTGATACNACAGAEST: gi|351013733|gb|FQ433885.1|FQ433885
genomic: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTGgtgtgtttcc ... tgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGA
EST: CCTGGGATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTG CACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGA
genomic: CCTGGAATATCGGCAGCAAGTTGCAGATAGTTTGAACAGAGCACTTCTTGgtgtgtttcc ... tgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGA
taatgctctaaactgtttgattcactcttggcttgtggttcatggtgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGACAACAGTAGTTAGACAATGCTTAAATCAAGAGCTTAGCAAG
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttccactggttcctacttgcttctgtatgctatatctggttgtaggatgttgtacacatatatgctttttatgcaaaattcattttctgattccattattctttttaataatgctctaaactgtttgattcactcttggcttgtggttcatggtgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGACAACAGTAGTTAGACAATGCTTAAATCAAGAGCTTAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG