1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcaatctgaagctagcgttcctttccatgtaattgaaaattcacaaaaatttattttccttttttaagcttcctgtacgctaacaaagttctcatgcagGTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG
species | Vitis vinifera |
transcript | Vv18s0001g06900.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTGTAAGACACAGGGAAATGGTTAGAAGATTTGGTGGCAAAGAGCA GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGEST: gi|110396178|gb|EC961859.1|EC961859
genomic: GGTTCTGTAAGACACAGGGAAATGGTTAGAAGATTTGGTGGCAAAGAGCAgtacgtaaat ... tctcatgcagGTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG
EST: GGTTCTGTAAGACACAGGGAAATGGTTAGAAGATTTGGTGGCAAAGAGCA GTTCCCTTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGEST: gi|22013797|gb|BQ798831.1|BQ798831
genomic: GGTTCTGTAAGACACAGGGAAATGGTTAGAAGATTTGGTGGCAAAGAGCAgtacgtaaat ... tctcatgcagGTTCCC-TTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG
EST: GTTCTGTAAGACACAGGGAAATGG-TAGNAAGATTTGGTGGCAAAGAGCA GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGEST: gi|352772878|gb|FQ470493.1|FQ470493
genomic: GTTCTGTAAGACACAGGGAAATGGTTAG-AAGATTTGGTGGCAAAGAGCAgtacgtaaat ... tctcatgcagGTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG
EST: GGTTCTGTAAGACACAGGGAAATGGTTAGAAGATTTGGTGGCAAAGAGCA GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAGAGTGG
genomic: GGTTCTGTAAGACACAGGGAAATGGTTAGAAGATTTGGTGGCAAAGAGCAgtacgtaaat ... tctcatgcagGTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGG
aaaaatttattttccttttttaagcttcctgtacgctaacaaagttctcatgcagGTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG
cgctaac putative branch site (score: 2)
ttctcat putative PPT
tttattttcctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaatctgaagctagcgttcctttccatgtaattgaaaattcacaaaaatttattttccttttttaagcttcctgtacgctaacaaagttctcatgcagGTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG
- - - -tgaagct
- - - - - - - - - - cctttcc
- - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaag