Sequence
atgc intronic sequence ATGC exonic sequencegtatggcaatgagagggcaactggtgttaaattaaggcatatatatatatatatatatatattgataatataaatgcatttttaatgctaaaaaacttatctgaggatgctttttattttttgtttttttttcctcagCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G10190.1 (Glycine max), 3'ss of exon 2
gtatggcaatgagagggcaactggtgttaaattaaggcatatatatatatatatatatatattgataatataaatgcatttttaatgctaaaaaacttatctgaggatgctttttattttttgtttttttttcctcagCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACT
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-------------------------------------------------------------------gta-aaatgtgttacacatgtataataag--gtttgaag-tattgtctaacaaatatcttaacatctt-aacgtttggcttgcttattgagAAAAGTTGTACAAGAGATTGAGCGACGTATATCAACTCAAGTAGAACATTTAAAAACC
upper sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G33390.1 (Glycine max), 3'ss of exon 2
gtatggcaatgagagggcaactggtgt-taaatta-aggcatatatat-atatatatatatatattgataatataaatgcatttttaatgctaa-aaaacttatctgaggatgctttttattttttgtttttttttcctcagCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACT
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gtatggcattggaggctttagtgttacatatatcataaatgtattcatgaaaagcacatatataagttcatgcaaaatgagttacacattataataaggtttagtttggagtattgtctaacaaatatctttgcatctt-agCGTGTGGCTTGCTTATTGAGAAAAGTTGTACAAGAGATTGAACGACGTATATCAACTCAAGCAGCACATCTAAAAACT
upper sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatggcaatgagagggcaactggtgttaaattaaggcatatatatatatatatatatatattgataatataaatgcatttttaatgctaaaaaacttatctgaggatgctttttattttttgtttttttttcctcagCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACT
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--------------------------gtacttgaatgccaacaattattaagatcatcacgtctataagataccttcctttgtgctttta-----cttcttgggaaatgttttga----caaaagctacaatgaacagCGTGTGGCATGCCTGTTAAGAAAAGTCGTGCAGGAGATTGAGCGGCGTATATCAACTCAAGCTGAACATCTAAGAACG
upper sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatggcaatgagagggcaactggtgttaaattaaggcatatatatatatatatatatatattgataatataaatgcatttttaatgctaaaaaacttatctgaggatgctttttattttttgtttttttttcctcagCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACT
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-----gtacttgagtctctaacaatcctga-ccatgatttttatggatgc-tacgtgcttgtaaa-agcaaatatgcatgcacacatttttcaaatgctgcttgggacatcttttgatct--aatctgtaatgatcagCGTGTAGCATGTCTGCTGAGAAAAGTCGTGCAGGAAATCGAGCGACGAATTTCAACTCAATCTGAACATCTAAGAACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgctaaaaaacttatctgaggatgctttttattttttgtttttttttcctcagCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACT
tgctaaa putative branch site (score: 2)
tgctttttattttttg putative PPT
atgctttttatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggcaatgagagggcaactggtgttaaattaaggcatatatatatatatatatatatattgataatataaatgcatttttaatgctaaaaaacttatctgaggatgctttttattttttgtttttttttcctcagCGTGTGGCATGTCTATTGAGAAAAGTTGTGCAGGAAATTGAGCGGCGAATATCAACTCAAGCAGAACACTTAAGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC