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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaattctccaattcatatggtattttcttttctgggtgttgaatttttcttgccatctttaacttattgctaatttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGTTGTGTCCAGCTTCTTGGCTTCTGCACATTCGAGGCTTGTGTGGGGATCT

Basic information

species Vitis vinifera
transcript Vv16s0098g01290.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g01290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G13760.2 (Glycine max), 3'ss of exon 5
gtatgtcaattctccaattcatatggtattttcttttctgggtgttgaatt---tttcttgccatctt----taacttattgctaatttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGTTGTGTCCAGCTTCTTGGCTTCTGCACATTCGAGGCTTGTGTGGGGATCT
|||||  | |  |||| |  |        |||| |  || |   |   |||   | ||   |||| ||    || ||| |       ||||| ||| | ||||| |  |||||    |||||||| ||||||||||||||  | |||||  | |||||||||||||||||  | || |||  |||||| || || |
gtatgctattcttccattatactcttctctttcctccctagtattctgattaaatctcacaccattttgctatatcttgtcttggtgttggaacagTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATAT

upper sequence: Vv16s0098g01290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G41090.1 (Glycine max), 3'ss of exon 5
gtatgtcaattctccaattcatatggtattttcttttctggg----tgttgaatttttcttgccatctt----taacttattgctaatttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGTTGTGTCCAGCTTCTTGGCTTCTGCACATTCGAGGCTTGTGTGGGGATCT
|||||  | || ||||||  |        |||| |  || |     || | ||  ||||   |||| ||    || ||| |      | |||| ||| | ||||| |  || |||   |||||||| ||||||||||||||  | |||||  | |||||||||||||||||  | || |||  |||||| || || |
gtatgctatttttccaatgtactcttctctttcctccctagtattctgattaacatttcacaccattttgctgtatcttgtcttggttgtggaacagTTCTTGGTAGTTCCCTCCGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110414050|gb|EC979873.1|EC979873
EST:     TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAAT                         ATTTTGCTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
genomic: TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAATgtatgtcaat ... tttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
EST: gi|33408764|gb|CF214391.1|CF214391
EST:     TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAAT                         ATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
genomic: TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAATgtatgtcaat ... tttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
EST: gi|110414298|gb|EC980125.1|EC980125
EST:     GCTTCCCATTGTGACAAAT                         ATTTTGCTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
genomic: GCTTCCCATTGTGACAAATgtatgtcaat ... tttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
EST: gi|33402302|gb|CF207929.1|CF207929
EST:     TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAAT                         ATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
genomic: TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAATgtatgtcaat ... tttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
EST: gi|33408846|gb|CF214473.1|CF214473
EST:     CTGCTTCCCATTGTGACAAAT                         ATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
genomic: CTGCTTCCCATTGTGACAAATgtatgtcaat ... tttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
EST: gi|33402051|gb|CF207678.1|CF207678
EST:     TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAAT                         ATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT
genomic: TCGTTTTTGTGATCTCTTCTGCTTCTCTCCTGCTTCCCATTGTGACAAATgtatgtcaat ... tttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgggtgttgaatttttcttgccatctttaacttattgctaatttggagcagATTTTGGTTGAACCTTCCAAGGTGAAAGGCGGAAGCATCTCATTTGCAGGTTGTGTCCAGCTTCTTGGCTTCTGCACATTCGAGGCTTGTGTGGGGATCT
                                       tgctaat  putative branch site (score: 2)
                          atctttaacttatt  TA-rich tract