1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgcctttaacctgctgaaatagtagttgtgctattaacaaacattcacttacttttagataccctggatgttttcctcaattgtttaattctcaatgcagGAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTACTTGGGTCCTAATCCAGGTCTTCCCTGTCTAAGTGAACAACCAGCCCAGG
species | Vitis vinifera |
transcript | Vv15s0046g00180.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGGGTTGATGTTATTGATGGATCGGATCCTGATCCCATGAAGCTTCAG GAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTACEST: gi|110412945|gb|EC978712.1|EC978712
genomic: GAAGGGTTGATGTTATTGATGGATCGGATCCTGATCCCATGAAGCTTCAGgtaagcttgg ... ctcaatgcagGAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTAC
EST: GAAGGGTTGATGTTATTGATGGATCAGATCCTGATCCCATGAAGCTTCAG GAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCAAGATTGCAGTACEST: gi|110730732|gb|EE108144.1|EE108144
genomic: GAAGGGTTGATGTTATTGATGGATCGGATCCTGATCCCATGAAGCTTCAGgtaagcttgg ... ctcaatgcagGAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTAC
EST: GAAGGGTTGATGTTATTGATGGATCGGATCCTGATCCCATGAAGCTTCAG GAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTAC
genomic: GAAGGGTTGATGTTATTGATGGATCGGATCCTGATCCCATGAAGCTTCAGgtaagcttgg ... ctcaatgcagGAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTAC
cacttacttttagataccctggatgttttcctcaattgtttaattctcaatgcagGAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTACTTGGGTCCTAATCCAGGTCTTCCCTGTCTAAGTGAACAACCAGCCCAGG
ttctc CT-rich tract
tcaattgtttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctttaacctgctgaaatagtagttgtgctattaacaaacattcacttacttttagataccctggatgttttcctcaattgtttaattctcaatgcagGAAAGAGAGAATGCCTGGTTTGCTAGTTCTCTGAAATCTAGATTGCAGTACTTGGGTCCTAATCCAGGTCTTCCCTGTCTAAGTGAACAACCAGCCCAGG
tgccttt
- - - -aacctgc
- - - - - - - -gaaatag
- - - - - - - - - - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgga