Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctgatttttttttattttttatgtttatggacatattctgttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC

Basic information

species Vitis vinifera
transcript Vv14s0171g00330.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os01g70960.1 (Oryza sativa), 3'ss of exon 5
-----tgctgatttttttttattttttatgtttatggacatattctgttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
     |||| |  |  || | || ||  |  |  |     |   ||    |   |  | | | |     ||||| |  |   |  ||| |     | |||   |||| || ||||| ||||| |||||||| ||||||||||| ||||| || || ||||| || ||||| |||||||| ||| | |||||||||||||| || |
ttgcctgctaaagtgcttctgttattgttactcctcctagtgcactccctaaatttgcttttgcagtgtcctaacc--ttctggcgttgatttgaaattt---agATTCGTGAAGGCTTGCATTACAATCCCTACTTCCCTGGTGGTGCCATAGCCATGCCCAAGATGCTTATTGATGGAGCAGTCGAGTATGAAGATGGCACTC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 3'ss of exon 6
tgctgatttttttttattttttatgttta----tggacatattctgttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatattt-ttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
    | | ||||| ||  | | || |||     |||   | |||||||  |      ||     | | |   || | | || |   |     || | | || |||||||| || || ||||| |||||||| ||||||||||| ||||| || |||||||| || ||||| || ||||| ||  |||| |||||||||||||| |
----gttatttttctagctgtaatttttcaagctggttgtgttctgttatttgctttctgcag-tgtgcaacattagtaaactctctggttgatttgtattctagATCCGTGAGGGTTTGCATTACAATCCCTACTTCCCTGGTGGTGCCATAGCTATGCCCAAGATGCTTATAGATGGAGCTGTTGAATATGAAGATGGTACTC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G158479_T04 (Zea mays), 3'ss of exon 5
--------tgctgatttttttttattttttatgtttatggacatattctgttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
         | | |  ||  |||   || |  |  | || |   ||   | || ||      |||  |   | | || ||   ||  | |     | |    |  ||||| || || ||  ||||||||||||| ||||||||||| ||||| || || ||||| || ||||| | |||||| ||  |||||||||| |||||||| |
gcataccaaggtcaccttggtttgccttgt-cgcctttgaaaccatg--gctcttg-----ttatctcgtaatcaaaccataaaaactttggtttatttgcatcctagATTCGTGAGGGTCTGCACTACAATCCCTACTTCCCTGGTGGTGCCATAGCCATGCCGAAGATGCTTAATGATGGAGCTGTTGAGTATGAGGATGGTACAC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G032367_T01 (Zea mays), 3'ss of exon 5
tgctgatttttttttattttttatgtttatggacatattct-gttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatattt-ttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
   | |   | | |||| ||| ||  |  |   | | || | ||   ||         || |  |  |||  |   ||    ||     || | | |  ||||| || || ||  |||||||||| || ||||||||||| ||||| || || ||||| || ||||||| |||||| ||  |||||||||| |||||||| |
--ttaaggatgtattatctttcatactcttttccttttttttgtgtttgcctttactatcttacaagtaacgataaaaaacattggttgatctgtatcctagATTCGTGAGGGTCTGCACTACAACCCCTACTTCCCTGGTGGTGCCATAGCCATGCCCAAGATGCTCAATGATGGAGCTGTTGAGTATGAGGATGGTACTC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G07020.1 (Glycine max), 3'ss of exon 5
----tgctgatttttttttattttttatgtttatggacatattctgttcatgatg-acctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
    |  | ||  ||| | |  |||   |||  |  ||| || ||    ||  || || ||       |  |  |  || | | |  ||  ||||| |  |||||||  |||||||  ||||||| |||||||| || ||||| || || |||||||||||||||||||| | |||||||||  |||| |||||||||||||| |
aacttaattatactttctcaactttctagttc-tcaacaaat-ctaaatatattgcacttaaagtgaaaatt--ttgattatggttctc-taaataataatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAATATGAAGATGGTACCC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G22530.2 (Glycine max), 3'ss of exon 5
tgctgattttttttta-ttttttatgtttatggacatattctgttcatgatgacctattcctctacctaatcaatcaa--gttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
     | ||  || || ||| | |  ||| |     |   |   ||   ||    |   | |  |   ||    || |  ||| ||    || |    |||||||  |||||||  ||||||| |||||||| || ||||| || || |||||||||||||||||||| | |||||| ||  |||| |||||||||||||| |
---gaacttaattatactttctcaactttctaattctcaacaaatctaaatatattgcacttaaagtgaaaatttcgattgtttttttttaaaaaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCTATGCCTAAAATGCTTAATGATGGCGCTGTTGAATATGAAGATGGTACCC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G24620.2 (Glycine max), 3'ss of exon 5
tgc-tgatttttttttattttttatgtttatggacatattctgttcatgatgacctattcctctacctaatca-atcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
|   || |  |  || || | | || ||| |    |||      |  ||||    | ||| |  || |  |   || |   |||||| ||||| |  |||||||  |||| ||  | || || ||||||||||| ||||| || |||||||| |||||||||||||| | |||||||||  | || |||||||||||||| |
tatatggtactagttcatatatcat-tttgtccctataccgatgtactgatattgtgttcttaaacttcttttcatgactatgttca-aaataataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACCC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G06700.2 (Glycine max), 3'ss of exon 5
tgctgatttttttttattttttatgtttatggacatattctgttcatgatgacctattcctctacctaatcaatcaagttgttcacaaa-tatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
   |  |  |  || || | | || ||| |    |||      |  ||||    | ||| |  ||||  |       | | |   |||| || |  |||||||  |||| ||  | || || ||||||||||| ||||| || |||||||| |||||||||||||| | |||||||||  | || |||||||||||||| |
atttagtactagttcatatatcat-tttgtccctataccgatgtactgatattgtgttcttaaacctttttttcatggctatgttcaaaataataatgtagATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACTC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G27240.1 (Arabidopsis thaliana), 3'ss of exon 5
tgctgatttttttttattttttatgtttatggacatattctg-ttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
   | | ||| | | |||||  |  ||   | || | |||   ||||   ||              ||  | |   ||    | |    |||  | |  ||||  |||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||  ||  |||||||||||||||||   |
--gtaagtttctctcattttccacatt---gaacttcttcgaattcaaagtg--------------ctggttatgaaaa--atccgatgataactgtacagATTAGAGAGGGGTTACACTACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAAATGCTCAATGATGAAGCTGTTGAGTATGAAGATGGTGTCC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 3'ss of exon 4
tgctgatttttttttattttttatgtttatggacatattctgttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
   | | ||| | |  | |||| || || | ||| | || |    |     |  | ||         ||  ||||  ||   | ||   ||       ||||| |||| ||| | |||||||||||||| |||||||| || ||||| |||||||| ||||||||||  ||||  ||  | || ||||||||||| || |
--gtaaatttctctcctatttt-tgctt-tagacttgttattacaacttcaaattgttggaagttagaaataatcctgtgactaacgggtac------agATCAGAGAGGGGCTACACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCCAAAAATGCTCAACGATGAAGCTGTGGAATATGAAGATGGAACTC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ19800 (Selaginella moellendorffii), 3'ss of exon 3
tgctgatttttttttattttttatgtttatggacatattctgttcatgatgaccta---ttcctctacctaatcaatcaagttgttcacaa-atatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
                                                 | | |||   ||  | | |  ||| || |   ||  |  |   |  ||||  |||||| |||| ||  | ||||||||||| |||||||| |||||||| ||||| |||||  | ||  | || ||||| ||  ||||||| || || || || |
------------------------------------------------gtaagctagattttttttccggaatgaagcttttttctttcttcaccttttgatagATCAGAGACGGACTTCACTACAATCCATACTTCCCCGGGGGTGCCATTGCAATGCCACAGATTTTGATGGATGGGGCTGTTGAGTACGAGGACGGGACTC

upper sequence: Vv14s0171g00330.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ08633 (Selaginella moellendorffii), 3'ss of exon 3
tgctgatttttttttattttttatgtttatggacatattctgttcatgatgaccta---ttcctctacctaatcaatcaagttgttcacaa-atatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
                                                 | | |||   ||  | | |  ||| || |   ||  |  |   |  ||||  |||||| |||| ||  | ||||||||||| |||||||| |||||||| ||||| |||||  | ||  | || ||||| ||  ||||||| || || || || |
------------------------------------------------gtaagctagattttttttccggaatgaagcttttttctttctttaccttttgatagATCAGAGACGGACTTCACTACAATCCATACTTCCCCGGGGGTGCCATTGCAATGCCACAGATTTTGATGGATGGGGCTGTTGAGTACGAGGACGGGACTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360731|gb|EC924064.1|EC924064
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|77587867|gb|DV223133.1|DV223133
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110696692|gb|EE073029.1|EE073029
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|161720747|gb|FC069966.1|FC069966
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349823939|gb|FQ417326.1|FQ417326
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110381663|gb|EC935060.1|EC935060
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110379810|gb|EC945030.1|EC945030
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349807741|gb|FQ402132.1|FQ402132
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110426281|gb|EC992684.1|EC992684
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|77585756|gb|DV221974.1|DV221974
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|71873090|gb|DT022145.1|DT022145
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110693499|gb|EE069785.1|EE069785
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAAGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349820893|gb|FQ408601.1|FQ408601
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCCAGAAGGGTTGCACTACAATCCTTACTTTCCTGGGGGGTGCAATTGC
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGG-TGCAATTGC
EST: gi|349807532|gb|FQ401947.1|FQ401947
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110699690|gb|EE076907.1|EE076907
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110374848|gb|EC939786.1|EC939786
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110690901|gb|EE068387.1|EE068387
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|349811881|gb|FQ410678.1|FQ410678
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCA
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCA
EST: gi|349819860|gb|FQ404536.1|FQ404536
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         AATC-GAGAAGGGT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagA-TCCGAGAAGGGT
EST: gi|110379451|gb|EC944646.1|EC944646
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110708536|gb|EE086193.1|EE086193
EST:     ATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
genomic: ATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCT
EST: gi|110690784|gb|EE068257.1|EE068257
EST:     ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCG                         ATCCGAGAAGGGTTGCACTAC
genomic: ATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattctt ... atttttgtagATCCGAGAAGGGTTGCACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgacctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC
                  acctaat  putative branch site (score: 3)
                                            tattttt  putative PPT
                                    ttcacaaatattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgctgatttttttttattttttatgtttatggacatattctgttcatgatgacctattcctctacctaatcaatcaagttgttcacaaatatttttgtagATCCGAGAAGGGTTGCACTACAATCCTTACTTCCCTGGGGGTGCAATTGCTATGCCTAAAATGCTCATTGATGGTGCACTTGAGTATGAAGATGGTACGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
tgctgat
- - - - - - - - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaat