Sequence
atgc intronic sequence ATGC exonic sequence...agattccatttgctttcttgttttggcattttcctttgtaatttttacgttgtactttcatgataagatcttgtgatccgtcatctgttcttgttgctagGATCCAGTGCTCTGCAGTGTGACCGTTGGTGTGTCCCATTTTGAGAGATGTGCCCTTTGGGTTCAGGTCCTATATTATCCCTTCTATGGGAGCGGTGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0171g00280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G06580.1 (Glycine max), 3'ss of exon 5
--agattccatttgctttcttgttttggcattttcctttgtaatttttacgttgtactttcatgataagatcttgtgatccgtcatctgttcttgttgctagGATCCAGTGCTCTGCAGTGTGACCGTTGGTGTGTCCCATTTTGAGAGATGTGCCCTTTGGGTTCAGGTCCTATATTATCCCTTCTATGGGAGCGGTGTTG
| || | || |||| ||| || |||| | ||| || || | | || | | ||| | || | || ||||||||||| | ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| || | ||||| || |||||||| || ||| ||
acaaatgttgcattctctcttcacacagcagtt--ctttatcattcttttttttaaaatagattctggatccatgttcctgataatggtcttccattctcagGATCCAGTGTTGTGCAGTGTGACAGTTGGTGTTTCCCACTTTGAAAGATGTGCCCTTTGGGTTCAAGTATTGTATTACCCATTCTATGGTAGTAGTGCTG
upper sequence: Vv14s0171g00280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G24980.1 (Glycine max), 3'ss of exon 5
-agattccatttgctttcttgttttggc--attttcctttgtaatttttacgttg-tactttcatgataagatcttgtgatccgtcatctgttcttgttgctagGATCCAGTGCTCTGCAGTGTGACCGTTGGTGTGTCCCATTTTGAGAGATGTGCCCTTTGGGTTCAGGTCCTATATTATCCCTTCTATGGGAGCGGTGTTG
||| ||||| || || || | | |||| ||| || ||| || ||| ||| | ||| | || | | || ||||||||||| | ||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||| || | ||||| || |||||||| || |||| ||
attatttgctttgcattgttccttcacacaacagttctttaccattcttctgttaatagattctggat----ccatgttcctgataatattgttccattctcagGATCCAGTGTTGTGCAGTGTGACAGTTGGTGTTTCCCACTTTGAAAGATGTGCTCTTTGGGTTCAAGTATTGTATTACCCATTCTATGGTAGTGGTGCTG
upper sequence: Vv14s0171g00280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G01780.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------------------------------------------agattccatttgctttcttgttttgg---cattt---tcctttgtaatttttacgtt----gtactttcatgataagatcttgtgatccgtcatctgttcttgttgctagGATCCAGTGCTCTGCAGTGTGACCGTTGGTGTGTCCCATTTTGAGAGATGTGCCCTTTGGGTTCAGGTCCTATATTATCCCTTCTATGGGAGCGGTGTTG
||| | | | || | || | | ||| | ||| ||| | ||| || || || ||| || || || || | | |||| ||||||| || | |||||||| ||||||||||||||||| ||||| ||||||| | |||||||| ||||| || ||||| ||| ||| | | |
gttgcatgtcattcttcagtgcttatatactcccatctctttacagttctctaatttcttaagtcttgtcagttggaaaccgtttctgttcttaccaatcaatcagtttcgtatatgttagctgtattatcatggactctgtgatttacttttgt----agGATCCTGTACAATGCAGTGTCACCGTTGGTGTGTCCCAATTTGAAAGATGTGGTTTCTGGGTTCAAGTCCTCTACTATCCATTCCGTGGTGCTAGGGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacgttgtactttcatgataagatcttgtgatccgtcatctgttcttgttgctagGATCCAGTGCTCTGCAGTGTGACCGTTGGTGTGTCCCATTTTGAGAGATGTGCCCTTTGGGTTCAGGTCCTATATTATCCCTTCTATGGGAGCGGTGTTG
tctgttctt CT-rich tract
atgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agattccatttgctttcttgttttggcattttcctttgtaatttttacgttgtactttcatgataagatcttgtgatccgtcatctgttcttgttgctagGATCCAGTGCTCTGCAGTGTGACCGTTGGTGTGTCCCATTTTGAGAGATGTGCCCTTTGGGTTCAGGTCCTATATTATCCCTTCTATGGGAGCGGTGTTG
- - - catttgc
- - - - - - - - - - - - ggcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg