1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctagtgataattttaaaagtcataacctaaatgctccttttatatagcaaaatccatgcacaagtgctaaacttatttccctctccgtcttatttgtagGAGGAAGATGTTGACATTATTGTGCATCACATCCTTGGTGTGCTTGACTCAGTCATCAAAAG
species | Vitis vinifera |
transcript | Vv14s0128g00310.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tagcaaaatccatgcacaagtgctaaacttatttccctctccgtcttatttgtagGAGGAAGATGTTGACATTATTGTGCATCACATCCTTGGTGTGCTTGACTCAGTCATCAAAAG
tgctaaa putative branch site (score: 2)
cttatttccctctccg CT-rich tract
taaacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagtgataattttaaaagtcataacctaaatgctccttttatatagcaaaatccatgcacaagtgctaaacttatttccctctccgtcttatttgtagGAGGAAGATGTTGACATTATTGTGCATCACATCCTTGGTGTGCTTGACTCAGTCATCAAAAG
- - - - - - - -aaaagtca
- - - - - - - - - - - - aacctaa
- - - - - - - - - - - - - - - - tgctcct
- - - - - - - - - - - - - - - - - - - - - - - agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagtgc