1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccttttttatatagtcctctaaatgtttggattttaatgcctcttgattttcatattccctttgtttctttttctttttggtatttttttattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGACAGCATGGAAATGAGTTCATTGTCCCAAACCACTTCCTCTTCTGCTGTA
species | Vitis vinifera |
transcript | Vv14s0066g01720.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGAEST: gi|110414174|gb|EC980000.1|EC980000
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGAEST: gi|27582601|gb|CB005296.1|CB005296
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGAEST: gi|110376406|gb|EC941470.1|EC941470
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGAEST: gi|110411210|gb|EC976916.1|EC976916
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGAEST: gi|110405938|gb|EC971496.1|EC971496
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
EST: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTG CTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
genomic: TGGCAGTAGGAAGAATTTATGGCATAATGTGGCAAACCTGCTAAGGCCTGgtgagccatc ... tattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGA
tgattttcatattccctttgtttctttttctttttggtatttttttattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGACAGCATGGAAATGAGTTCATTGTCCCAAACCACTTCCTCTTCTGCTGTA
tcttgat putative branch site (score: 4)
ttccctttgtttcttt putative PPT
tttgtttctttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttttttatatagtcctctaaatgtttggattttaatgcctcttgattttcatattccctttgtttctttttctttttggtatttttttattttgcagCTCTTTCATGTTGAATGCCAGTGGACCTGAGAAGTGGTGTCTCTAACCAGACAGCATGGAAATGAGTTCATTGTCCCAAACCACTTCCTCTTCTGCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - cctctaa
- - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - -taatgcc