1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtggatgtgcatgaatttatcagtaggtcttatggatgtcatgtattcagcctttaatattgctaattcttgcttcttaattgaattttcaattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGGTGCTGGTGGAAGGCCAGCAAAGGGCATAGGGCGTGGCATAGATGAAGG
species | Vitis vinifera |
transcript | Vv14s0060g02240.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG ATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGEST: gi|71866659|gb|DT015714.1|DT015714
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAG
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG ATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGEST: gi|37189144|gb|CF608493.1|CF608493
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAG
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG ATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGEST: gi|110368812|gb|EC932903.1|EC932903
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAG
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG ATAGAAAACCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGEST: gi|71886236|gb|DT035291.1|DT035291
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAG
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG ATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGEST: gi|37184974|gb|CF604327.1|CF604327
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAG
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG ATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGEST: gi|110400007|gb|EC966544.1|EC966544
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAG
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCG ATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGEST: gi|37189131|gb|CF608480.1|CF608480
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAG
EST: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCAG ATAGAAAGCCACCAGGAGTTGGGCGTGGGA
genomic: GTGATTGATAAAGTTCAGGAAGAAACAAAAAATCGTGCCGgtatggtttg ... caattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGA
attcagcctttaatattgctaattcttgcttcttaattgaattttcaattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGGTGCTGGTGGAAGGCCAGCAAAGGGCATAGGGCGTGGCATAGATGAAGG
ttttc CT-rich tract
ttcttaattgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtggatgtgcatgaatttatcagtaggtcttatggatgtcatgtattcagcctttaatattgctaattcttgcttcttaattgaattttcaattttcagATAGAAAGCCACCAGGAGTTGGGCGTGGGAGAGGAAGAGGTAGAGAGGAAGGTGCTGGTGGAAGGCCAGCAAAGGGCATAGGGCGTGGCATAGATGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-gtggatg
- - - - -gcatgaa
- - - - - - - - - - - - - - -cttatgg
- - - - - - - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - cagcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattgaa