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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgttaattacattgttgtttctgaatcttgttaatctggtattttaagggaactcaacatacttttctcttttttttcttcacactaaaattatgttgaatttatcttgctaaagagctctgttttactcctcagTCCAACACTCAAGGGAATATCTATTATTTCCTTCTTCTATGAGTTGGGTATGTCTGGCATCAGTGGGGTCTTGCTG

Basic information

species Vitis vinifera
transcript Vv13s0106g00610.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688802|gb|EC925947.1|EC925947
EST:     GCAGCAACTCTGGTTCTTAGCAG                         TCCAACACTCAAGGGAATATCTATTATTTCCTTCTTCTATGAGTTGGGTAT
genomic: GCAGCAACTCTGGTTCTTAGCAGgtatatatgt ... tactcctcagTCCAACACTCAAGGGAATATCTATTATTTCCTTCTTCTATGAGTTGGGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacactaaaattatgttgaatttatcttgctaaagagctctgttttactcctcagTCCAACACTCAAGGGAATATCTATTATTTCCTTCTTCTATGAGTTGGGTATGTCTGGCATCAGTGGGGTCTTGCTG
                           tgctaaa  putative branch site (score: 2)
                                     ctctgttttactcctc  putative PPT
     taaaattatgttgaat  TA-rich tract