Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttatggccacccttcatgttcgtatttttttttttttcctgctgttgttgggtgtttaaagtgaagtaaattgcccagtatccttcatatttgtagGCAACCATAGCGCCTCCAGTGACCGGGAAGATGTTCAAAGGACTGTGTATCTGCTACACTGTCATAATCTTGACATATTTCAGTGTAGGAATATCTGGCT

Basic information

species Vitis vinifera
transcript Vv13s0074g00570.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376219|gb|EC941268.1|EC941268
EST:     TCTCAATCATCGCCACCACATATGCAAGTGGAATCATTCCTGAAATTCAG                         GCAACCATAGCGCCTCCAGTGACCGGGAAGATGTTCAAAGGACTGTGTATC
genomic: TCTCAATCATCGCCACCACATATGCAAGTGGAATCATTCCTGAAATTCAGgtttgttatg ... atatttgtagGCAACCATAGCGCCTCCAGTGACCGGGAAGATGTTCAAAGGACTGTGTATC
EST: gi|110423288|gb|EC989630.1|EC989630
EST:     TCTCAATCATCGCCACCACATATGCAAGTGGAATCATTCCTGAAATTCAG                         GCAACCATAGCGCCTCCAGTGACCGGGAAGATGTTCAAAGGACTGTGTATC
genomic: TCTCAATCATCGCCACCACATATGCAAGTGGAATCATTCCTGAAATTCAGgtttgttatg ... atatttgtagGCAACCATAGCGCCTCCAGTGACCGGGAAGATGTTCAAAGGACTGTGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgttgggtgtttaaagtgaagtaaattgcccagtatccttcatatttgtagGCAACCATAGCGCCTCCAGTGACCGGGAAGATGTTCAAAGGACTGTGTATCTGCTACACTGTCATAATCTTGACATATTTCAGTGTAGGAATATCTGGCT
                                       tccttcat  CT-rich tract
                      aagtaaatt  TA-rich tract