1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgggttttgaaccccttctttccgccaacgtcaatgatggtattttacttgctccataaggattttcgaacttggcatgagaattttccttcattttgtagGATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGGTTTTGGACAATGGAAAAAGTTGCATTAATTTCCTTGGTGGCAACAGTGGTTGAG
species | Vitis vinifera |
transcript | Vv13s0074g00040.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGGCTGGTAGCATTTCCATGTTTGCATTTGGCTTCTTGATTTCA-TTGG GATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGCTAGATTGGEST: gi|351029624|gb|FQ427464.1|FQ427464
genomic: TGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGGgtgggttttg ... cattttgtagGATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGG
EST: TGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGG GATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGGTTTTG
genomic: TGGGCTGGTAGCATTTCCATGTTTGTATTTGGCTTCTTGATTTCAATTGGgtgggttttg ... cattttgtagGATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGGTTTTG
acttgctccataaggattttcgaacttggcatgagaattttccttcattttgtagGATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGGTTTTGGACAATGGAAAAAGTTGCATTAATTTCCTTGGTGGCAACAGTGGTTGAG
ttttccttcattttgt CT-rich tract
agaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttttgaaccccttctttccgccaacgtcaatgatggtattttacttgctccataaggattttcgaacttggcatgagaattttccttcattttgtagGATGCTTCACTACTTTTCAGCCCTGGGGTACTTCCAGTTAGATTGGTTTTGGACAATGGAAAAAGTTGCATTAATTTCCTTGGTGGCAACAGTGGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG