Sequence
atgc intronic sequence ATGC exonic sequencegtcagtgcagtttcttagtttttgttgttttcttggctgttgagttcatgttggttttactcagctaagctttgaaacttccatgaatgcagATTTTCGTCATGTGGTTGGATTTAGTGACTTACTTGCATCACCATGGCCATGAAGAGAAGCTTCCTTGGTATCGTGGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os03g18070.1 (Oryza sativa), 3'ss of exon 5
gtcagtgcag------tttcttagtttttg-----ttgttttcttggctgttgagttcatgttg-gttttactcagctaagctttgaaacttccatgaatgcagATTTTCGTCATGTGGTTGGATTTAGTGACTTACTTGCATCACCATGGCCATGAAGAGAAGCTTCCTTGGTATCGTGGAAAG
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gtaagagcatgatatttttattagtttctgcaaaatgataatttggattgatgggagtgtctggtgatgtatgtgttcacattttgtaaaccctt---atgcagATATTTGTTATGTGGCTTGATTTTGTCACATATTTGCACCATCATGGCCATGAGGACAAGCTTCCTTGGTACCGTGGAAAG
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G05580.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------gt-cagtgcagtttc--ttagtttttgttgttttcttggctgttgagttcatgttggttttactcagctaagctttgaaacttccatgaatgcagATTTTCGTCATGTGGTTGGATTTAGTGACTTACTTGCATCACCATGGCCATGAAGAGAAGCTTCCTTGGTATCGTGGAAAG
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gtatcctctacttctgtacctctccgtttcagacaaacttgattatgtattcctttgttgcctcagatgtgaaggtgtttattggaattttcaaaca-caattaatgcagATATTTGTAATGTGGTTGGACTTCGTCACTTACTTGCACCACCATGGACATGAAGACAAGCTCCCTTGGTATCGTGGAAAG
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G11170.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcagtgcagtttcttagtttttgttgttttcttggctgttgagttcatgttggttttactcagctaagctttgaaa--cttccatg---aatgcagATTTTCGTCATGTGGTTGGATTTAGTGACTTACTTGCATCACCATGGCCATGAAGAGAAGCTTCCTTGGTATCGTGGAAAG
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----gtaatgcgccgctgttactcccctgtttcagcctgagcaatttgtgtattatttcctctgccttactcaaaaaggtttttatgtcaaatacagATAAATGTAATGTGGTTGGACTTTGTGACTTACCTGCATCACCATGGTCATGAAGATAAGCTTCCTTGGTACCGTGGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgagttcatgttggttttactcagctaagctttgaaacttccatgaatgcagATTTTCGTCATGTGGTTGGATTTAGTGACTTACTTGCATCACCATGGCCATGAAGAGAAGCTTCCTTGGTATCGTGGAAAG
cttccat CT-rich tract
ttttact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtgcagtttcttagtttttgttgttttcttggctgttgagttcatgttggttttactcagctaagctttgaaacttccatgaatgcagATTTTCGTCATGTGGTTGGATTTAGTGACTTACTTGCATCACCATGGCCATGAAGAGAAGCTTCCTTGGTATCGTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC