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...agactgaacaaatcattgaatgcagggctcagagctagatgatttgtatatactattgttttattccagtcaactgaagagagccatttgggttttgcagATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGAGCTAAGTGCTGAACCTCAAATTAAAAGAACCATTTGAGGGCTGATGTAG
species | Vitis vinifera |
transcript | Vv13s0019g04090.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACAACCAAGAAG ATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGAEST: gi|110711177|gb|EE087407.1|EE087407
genomic: AGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACAACCAAGAAGgttgggttca ... ggttttgcagATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGA
EST: GAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGGAACATC-ANGGAG ATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTEST: gi|28961969|gb|CB341008.1|CB341008
genomic: GAGAGTCCTCTCAACAGCTATGCTGCATCATTATGG-AACAACCAAGAAGgttgggttca ... ggttttgcagATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATT
EST: AGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACAATCAGGAAG ATTACAGAAGGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGAEST: gi|110686046|gb|EE063296.1|EE063296
genomic: AGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACAACCAAGAAGgttgggttca ... ggttttgcagATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGA
EST: AGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACAATCAGGAAG ATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGA
genomic: AGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACAACCAAGAAGgttgggttca ... ggttttgcagATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGA
gtatatactattgttttattccagtcaactgaagagagccatttgggttttgcagATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGAGCTAAGTGCTGAACCTCAAATTAAAAGAACCATTTGAGGGCTGATGTAG
tactattgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agactgaacaaatcattgaatgcagggctcagagctagatgatttgtatatactattgttttattccagtcaactgaagagagccatttgggttttgcagATTACAGAAAGATGGTCCACAAGCAATATTTTGCAGGAGAAGCATTTGAGAGCTAAGTGCTGAACCTCAAATTAAAAGAACCATTTGAGGGCTGATGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -gaacaaa
- - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatttg