1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagataaaatccattttcaccctgtattgaagttttgttctaacattgtctgaatgctaagtttggtacttatgggtgacgtttctgttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCTCTACATGACCTACAGTGGGGAGAACACATTTGGTTCACTTATAATGTA
species | Vitis vinifera |
transcript | Vv12s0059g00660.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|30298947|gb|CB975741.1|CB975741
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110376041|gb|EC941080.1|EC941080
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|32459176|gb|CD800350.1|CD800350
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110727718|gb|EE104797.1|EE104797
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|29785432|gb|CB342415.2|CB342415
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110377132|gb|EC942192.1|EC942192
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110715799|gb|EE094264.1|EE094264
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110702636|gb|EE078779.1|EE078779
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|22007625|gb|BQ792659.1|BQ792659
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110415048|gb|EC980917.1|EC980917
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|30297965|gb|CB974759.1|CB974759
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110717624|gb|EE093643.1|EE093643
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|30298891|gb|CB975685.1|CB975685
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110411241|gb|EC976948.1|EC976948
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110691284|gb|EE069210.1|EE069210
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|28963447|gb|CB342480.1|CB342480
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|110402467|gb|EC968868.1|EC968868
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|34550348|gb|CF518566.1|CF518566
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|351017545|gb|FQ435898.1|FQ435898
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCEST: gi|30131346|gb|CB916685.1|CB916685
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: TCCTGAGAAGGCGATATTCTTTTTTATCAAGAACATTCTGCCGCCAACTG CGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
genomic: TCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaa ... gttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTC
aacattgtctgaatgctaagtttggtacttatgggtgacgtttctgttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCTCTACATGACCTACAGTGGGGAGAACACATTTGGTTCACTTATAATGTA
ttctaac putative branch site (score: 1)
tttctgtt putative PPT
ttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagataaaatccattttcaccctgtattgaagttttgttctaacattgtctgaatgctaagtttggtacttatgggtgacgtttctgttgttttagCGGCTATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGTTTTCTCTACATGACCTACAGTGGGGAGAACACATTTGGTTCACTTATAATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA