1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgatccttttttaggtaaataggctttttggaaaatatcccaagtttctctcaaatagaatgaggttttttataccactcaagttgtgtattttatctctCCTAAAGAACAAACATGAAGTTCAAAAGTTTGTTCACTTCTTACAATCTAATCGTGTTCATGAACAACTTTTCGAGGGGGCATTTGTAGAAGGACAAAAT
species | Vitis vinifera |
transcript | Vv12s0055g00890.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ttctctcaaatagaatgaggttttttataccactcaagttgtgtattttatctctCCTAAAGAACAAACATGAAGTTCAAAAGTTTGTTCACTTCTTACAATCTAATCGTGTTCATGAACAACTTTTCGAGGGGGCATTTGTAGAAGGACAAAAT
ttttatctct CT-rich tract
ttttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatccttttttaggtaaataggctttttggaaaatatcccaagtttctctcaaatagaatgaggttttttataccactcaagttgtgtattttatctctCCTAAAGAACAAACATGAAGTTCAAAAGTTTGTTCACTTCTTACAATCTAATCGTGTTCATGAACAACTTTTCGAGGGGGCATTTGTAGAAGGACAAAAT
- - - - - - aggtaaa
- - - - - - - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - - - -tcccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactca