Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatattcatatcagaaattgattaggaagaaacttatgattcaattttctgttgggcctaatttcttgtttcagGTGTTTCTTATATCAACCCGAGCTGGTGGGCTTGGACTGAATCTTGTCAGTGCAAACCGCGTAGTAATATTTGATCCAAACTGGAATCCTGCTCAAGATT

Basic information

species Vitis vinifera
transcript Vv12s0028g03440.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g03440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G13180.1 (Glycine max), 3'ss of exon 5
gtaaatattcatatcagaaattgattaggaagaaacttatgattcaattttctgttgggc-ctaatttcttgtttcagGTGTTTCTTATATCAACCCGAGCTGGTGGGCTTGGACTGAATCTTGTCAGTGCAAACCGCGTAGTAATATTTGATCCAAACTGGAATCCTGCTCAAGATT
||| || |  |    |  | ||||||| | |     ||   |||||||||    |||||  ||  ||| || ||| |||| || || |||||||| || || |||||||||||| |||| ||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| |
gtatatctcaaacctaatagttgattaagcatt--tttccaattcaatttgtgattgggggcttgtttattattttagGTATTCCTAATATCAACTCGTGCGGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCACAAGACT

upper sequence: Vv12s0028g03440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ05584 (Selaginella moellendorffii), 3'ss of exon 5
gtaaatattcatatcagaaattgattaggaagaaacttatgattcaattttctgttgggcctaatttcttgtttcagGTGTTTCTTATATCAACCCGAGCTGGTGGGCTTGGACTGAATCTTGTCAGTGCAAACCGCGTAGTAATATTTGATCCAAACTGGAATCCTGCTCAAGATT
                            | |   | || |  ||    ||||| |     ||   ||  | || |||||||| || || || || || |||||||| |||||||| ||||| || ||||||||| | || ||| | |||||||||||||||||||| || |||||| 
--------------------------gtggaacgatttgtt-tttttctttctatacaaactg--ttacttttccagGTGTTCCTCATCTCTACTCGTGCTGGTGGTCTTGGACTCAATCTGGTGAGTGCAAACAGGGTGGTAGTCTTTGATCCAAACTGGAATCCAGCACAAGATC

upper sequence: Vv12s0028g03440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ26199 (Selaginella moellendorffii), 3'ss of exon 5
gtaaatattcatatcagaaattgattaggaagaaacttatgattcaattttctgttgggcctaatttcttgtttcagGTGTTTCTTATATCAACCCGAGCTGGTGGGCTTGGACTGAATCTTGTCAGTGCAAACCGCGTAGTAATATTTGATCCAAACTGGAATCCTGCTCAAGATT
                           ||  |||   | || ||    ||||| |     ||   ||  | || |||||||| || || || || || |||||||| |||||||| ||||| || ||||||||| | || ||| | |||||||||||||||||||| || |||||| 
-------------------------gtggtggaacgatttgttttttctttctatacaaactg--ttacttttccagGTGTTCCTCATCTCTACTCGTGCTGGTGGACTTGGACTCAATCTGGTGAGTGCAAACAGGGTGGTAGTCTTTGATCCAAACTGGAATCCAGCACAAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattaggaagaaacttatgattcaattttctgttgggcctaatttcttgtttcagGTGTTTCTTATATCAACCCGAGCTGGTGGGCTTGGACTGAATCTTGTCAGTGCAAACCGCGTAGTAATATTTGATCCAAACTGGAATCCTGCTCAAGATT
                                    gcctaat  putative branch site (score: 3)
                                          tttcttgtttc  CT-rich tract
              ttatgattcaatttt  TA-rich tract