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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactcttgacagtattgaaatatctatgtgtttgtccaaaatgttagttaacttgaaagagttgctcagtgatgcattaattcatatgtagttggttacttatttggtagcgtagttgcgttctatgaaacaaaaaaaggatgaacttctagcattcaaaatctgatgttttaaaaacccaattttctccgcagGAGGGAGAGGAAAAACGATTCCAACATAAAATGAAGGACGCTATTTGGGTCCCTAATCTTTTCCAGATTATTGTTGCACAGCATGAATACAAGAATGAGA

Basic information

species Vitis vinifera
transcript Vv12s0028g03230.t01
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgaacttctagcattcaaaatctgatgttttaaaaacccaattttctccgcagGAGGGAGAGGAAAAACGATTCCAACATAAAATGAAGGACGCTATTTGGGTCCCTAATCTTTTCCAGATTATTGTTGCACAGCATGAATACAAGAATGAGA
                     atctgat  putative branch site (score: 4)
                                           ttttctccgc  putative PPT
                        tgatgttttaaaaa  TA-rich tract