1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttgttcatttgtaacaacattgcttcattcaacaatttagttgatataattgaacatgcatatgctcagattcagaagaagcttagtttatgaggaaatcatttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTG
species | Vitis vinifera |
transcript | Vv12s0028g01100.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCCAGGAGTATGGGGAAATGAAG GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTGEST: gi|110730925|gb|EE108561.1|EE108561
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: TGGCCAGGAGTATGGGGAAATGAAN GGTATATTGATGGTCTTGGAGATGCAATGGAGATGGGCCTTGTGAAGGCTGEST: gi|110381894|gb|EC937946.1|EC937946
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: TGGCCAGGAGTATGGGGAAATGAAG GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTGEST: gi|26263992|gb|CA815055.1|CA815055
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: TGGCCAGGAGTATGGGGAAATGAAG GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTGEST: gi|110720549|gb|EE096568.1|EE096568
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: TGGCCAGGAGTATGGGGAAATGAAG GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTGEST: gi|110370834|gb|EC934386.1|EC934386
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: TGGCCAGGAGTATGGGGAAATGAAG GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
catgcatatgctcagattcagaagaagcttagtttatgaggaaatcatttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTG
tcatttttc CT-rich tract
aaatcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttcatttgtaacaacattgcttcattcaacaatttagttgatataattgaacatgcatatgctcagattcagaagaagcttagtttatgaggaaatcatttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTGTAGGAGTTTCTAACTACAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG