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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattaccaagaaagcatgttttattcacttttccttgcattgaaatgttattttattgccatgagttgctggactgtaagatgtgtttttgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAGGGATGACGAAAGATGAGGCTGAG

Basic information

species Vitis vinifera
transcript Vv11s0065g00320.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043926|gb|FQ431357.1|FQ431357
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351031738|gb|FQ459995.1|FQ459995
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351021488|gb|FQ446032.1|FQ446032
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|110731755|gb|EE106442.1|EE106442
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|352794354|gb|FQ481585.1|FQ481585
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|110385861|gb|EC950417.1|EC950417
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349822011|gb|FQ408340.1|FQ408340
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351026847|gb|FQ436500.1|FQ436500
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351025243|gb|FQ433660.1|FQ433660
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351045391|gb|FQ447656.1|FQ447656
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351041115|gb|FQ444092.1|FQ444092
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351022613|gb|FQ447135.1|FQ447135
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351040449|gb|FQ434582.1|FQ434582
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349809487|gb|FQ414377.1|FQ414377
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349824245|gb|FQ417632.1|FQ417632
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|30304313|gb|CB981107.1|CB981107
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCACCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351016593|gb|FQ424020.1|FQ424020
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|110689479|gb|EE065738.1|EE065738
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|352786908|gb|FQ481283.1|FQ481283
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351043726|gb|FQ431079.1|FQ431079
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351025600|gb|FQ426614.1|FQ426614
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351025823|gb|FQ427835.1|FQ427835
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351038974|gb|FQ457649.1|FQ457649
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351018428|gb|FQ439240.1|FQ439240
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351036694|gb|FQ457407.1|FQ457407
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGGAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351031403|gb|FQ445428.1|FQ445428
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351029736|gb|FQ427576.1|FQ427576
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351032941|gb|FQ461830.1|FQ461830
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349829562|gb|FQ420094.1|FQ420094
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|294965672|gb|GW837271.1|GW837271
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351051948|gb|FQ450639.1|FQ450639
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351024691|gb|FQ433106.1|FQ433106
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351017168|gb|FQ424595.1|FQ424595
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351017430|gb|FQ435783.1|FQ435783
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351017804|gb|FQ436157.1|FQ436157
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349827569|gb|FQ422437.1|FQ422437
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|156725857|gb|EV229968.1|EV229968
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349812437|gb|FQ407056.1|FQ407056
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGAACCAGTTATCTGTATGGTTTCTTTGATCA-GAACTGGAAAGAA
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAA-TGGAAGGAA
EST: gi|351037015|gb|FQ460725.1|FQ460725
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGGAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|110699436|gb|EE076435.1|EE076435
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|352786494|gb|FQ479103.1|FQ479103
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|294964049|gb|GW837852.1|GW837852
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349824515|gb|FQ413182.1|FQ413182
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351053908|gb|FQ441674.1|FQ441674
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349825823|gb|FQ423118.1|FQ423118
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|352790114|gb|FQ481313.1|FQ481313
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351055242|gb|FQ440581.1|FQ440581
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGGTCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349809005|gb|FQ407454.1|FQ407454
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349813553|gb|FQ413787.1|FQ413787
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|110697799|gb|EE075191.1|EE075191
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351024243|gb|FQ423666.1|FQ423666
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349814982|gb|FQ410205.1|FQ410205
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|161715904|gb|FC065505.1|FC065505
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351031621|gb|FQ459878.1|FQ459878
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|352794401|gb|FQ481632.1|FQ481632
EST:     TGGAGTGCCTCTTGGACGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCCAGAATGGAACGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|30304254|gb|CB981048.1|CB981048
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351013648|gb|FQ429789.1|FQ429789
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGGAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|71888991|gb|DT038046.1|DT038046
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351021529|gb|FQ446073.1|FQ446073
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|161719520|gb|FC066431.1|FC066431
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|110382788|gb|EC947109.1|EC947109
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349812407|gb|FQ406428.1|FQ406428
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349810332|gb|FQ401778.1|FQ401778
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|351043642|gb|FQ451573.1|FQ451573
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349830158|gb|FQ420418.1|FQ420418
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|34544506|gb|CF512738.1|CF512738
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTCCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|349824484|gb|FQ413151.1|FQ413151
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGGAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
EST: gi|71874115|gb|DT023170.1|DT023170
EST:     TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAG                         GATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG
genomic: TGGAGTGCCTCTTGGAGGGACAATTTTGGAGCAGCCTTTTGCCATTGGAGgtgtgttctc ... tgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttattttattgccatgagttgctggactgtaagatgtgtttttgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAGGGATGACGAAAGATGAGGCTGAG
                                       tgtttttgtttttc  CT-rich tract
                                         tttttgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattaccaagaaagcatgttttattcacttttccttgcattgaaatgttattttattgccatgagttgctggactgtaagatgtgtttttgtttttcagGATCTGGATCCAGTTATCTGTATGGTTTCTTTGATCAAGAATGGAAGGAAGGGATGACGAAAGATGAGGCTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - ccaagaa
- - - - - - - gcatgtt
- - - - - - - - - - - tattcac
- - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgga