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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcctttttcttgcaataataaggttagatagtcattttcattattggaaagagttaacaaactaatatatatgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAGTTTATGTGGTCAGCTGGTATGATTTCTGATCAAACATACAAGCTACTGA

Basic information

species Vitis vinifera
transcript Vv11s0037g00740.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031227|gb|FQ445252.1|FQ445252
EST:     GGCACAACTCAGCAACTAAAGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTT
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTT
EST: gi|351012141|gb|FQ426863.1|FQ426863
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351030034|gb|FQ430776.1|FQ430776
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|349826488|gb|FQ418579.1|FQ418579
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGNGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|349823897|gb|FQ415308.1|FQ415308
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGGTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|349826481|gb|FQ418572.1|FQ418572
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|29785430|gb|CB342413.2|CB342413
EST:     GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351013201|gb|FQ424906.1|FQ424906
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|110687957|gb|EE065957.1|EE065957
EST:     GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGGTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGGTTTTCCA
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGG-TTTTCCA
EST: gi|351022559|gb|FQ447081.1|FQ447081
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351013501|gb|FQ425532.1|FQ425532
EST:     GGCACAACTCAGCAACTAANGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|349826544|gb|FQ418635.1|FQ418635
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|18459529|gb|BM437807.1|BM437807
EST:     GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGAC
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGAC
EST: gi|351013562|gb|FQ425593.1|FQ425593
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACAATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351025963|gb|FQ427975.1|FQ427975
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351016943|gb|FQ424370.1|FQ424370
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351014108|gb|FQ434697.1|FQ434697
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351038161|gb|FQ460853.1|FQ460853
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351042964|gb|FQ434405.1|FQ434405
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGAGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|110358895|gb|EC919479.1|EC919479
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351040083|gb|FQ425169.1|FQ425169
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACCATTTCCATGACCACTTGGGGG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGG
EST: gi|110697944|gb|EE075394.1|EE075394
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGATCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|349823430|gb|FQ423241.1|FQ423241
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
EST: gi|351019440|gb|FQ429575.1|FQ429575
EST:     GGCACAACTCAGCAACTAAGGCAAAATCAATTAATCTAAAGGGTTACATG                         GTGGGAGATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG
genomic: GGCACAACTCAGCAACTAAGGCAGAATCAATTAATCTAAAGGGTTACATGgtatggtcct ... tgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatagtcattttcattattggaaagagttaacaaactaatatatatgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAGTTTATGTGGTCAGCTGGTATGATTTCTGATCAAACATACAAGCTACTGA
                                 aactaat  putative branch site (score: 2)
                         agttaacaaactaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggtcctttttcttgcaataataaggttagatagtcattttcattattggaaagagttaacaaactaatatatatgtggtgtagGTGGGAAATGCTCTGACTGACGATTTCCATGACCACTTGGGGGTTTTCCAGTTTATGTGGTCAGCTGGTATGATTTCTGATCAAACATACAAGCTACTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT