1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgttcctcttgttctggacttaaaatgctttattacagagcctgtttagtttttccttctgtttctctctctttctgacaatttggtaatcttacatcagGCAAACAAGGAAAGAATCTCATTTGGCCGTTTTGAAGTCCACGAGATTGCTGCGTTTGTGTTGAATTCAGCTGGCCATTATGAGGCGATCAACAGAAACT
species | Vitis vinifera |
transcript | Vv11s0037g00730.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGAATTAGTTAAAACATTATACACAAAGCATCAACTTGACAAGCAG GCAAACAAGGAAAGAATCTCATTTGGCCGTTTTGAAGTCCACGAGATTGCTEST: gi|110721282|gb|EE098104.1|EE098104
genomic: AGAAAGAATTAGTTAAAACATTATACACAAAGCATCAACTTGACAAGCAGgtaaactatt ... cttacatcagGCAAACAAGGAAAGAATCTCATTTGGCCGTTTTGAAGTCCACGAGATTGCT
EST: AGAAAGA-TTANTTTAAACATTATACACAAAGCATCAACTTGACAAGCAG GCAAACAAGGAAAGAAATCTCTTTTG-CCGTTTTGAAATCCACEST: gi|34545229|gb|CF513461.1|CF513461
genomic: AGAAAGAATTAGTTAAAACATTATACACAAAGCATCAACTTGACAAGCAGgtaaactatt ... cttacatcagGCAAACAAGGAAAGAA-TCTCATTTGGCCGTTTTGAAGTCCAC
EST: AGAAAGAATTAGTTAAAACATTATACACAAAGCATCAACTTGACAAGCAG GCAAACAAGGAAAGAATCTCATTTGGCCGTTTTGAAGTCCACGAGATTGCT
genomic: AGAAAGAATTAGTTAAAACATTATACACAAAGCATCAACTTGACAAGCAGgtaaactatt ... cttacatcagGCAAACAAGGAAAGAATCTCATTTGGCCGTTTTGAAGTCCACGAGATTGCT
ttagtttttccttctgtttctctctctttctgacaatttggtaatcttacatcagGCAAACAAGGAAAGAATCTCATTTGGCCGTTTTGAAGTCCACGAGATTGCTGCGTTTGTGTTGAATTCAGCTGGCCATTATGAGGCGATCAACAGAAACT
taatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcctcttgttctggacttaaaatgctttattacagagcctgtttagtttttccttctgtttctctctctttctgacaatttggtaatcttacatcagGCAAACAAGGAAAGAATCTCATTTGGCCGTTTTGAAGTCCACGAGATTGCTGCGTTTGTGTTGAATTCAGCTGGCCATTATGAGGCGATCAACAGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - cctcttg
- - - - - - - - - cttaaaa