Sequence
atgc intronic sequence ATGC exonic sequence...gagccttggtgaatagaagaaaccctttttcattgtagggaacaaatccagtttttttctaccctttatatgtagtaaatgcatttccatgcttatgtagGTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTTCCAGCTATAGTTGGTTGGATGTCAAATGGGGAGAAGCACGTGTTAAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0217g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G43430.1 (Glycine max), 3'ss of exon 5
-------gagccttggtgaatagaagaaaccctt-------tttcattgtaggga---acaaatccagtttttttctaccctttatatgt----agtaaatgcatttcc---atgcttatgtagGTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTTCCAGCTATAGTTGGTTGGATGTCAAATGGGGAGAAGCACGTGTTAAGAA
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gtatgtaaaagctggatgtgaaaaacatttttctctgttaatttctttctttggacctataaggaaagtcttatgctttgttttaaagggtaagatttaatgtatatcttgaatgatt-tgtagCTTCATGATGTTGCTGATCCTAGAGTGAAAACACTAGAAGTTGATGCACTTCCAGCTATAGTAGGTTGGCTACCAAATGGAGAAAAGCGTATCCTGAAAA
upper sequence: Vv08s0217g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G19300.1 (Glycine max), 3'ss of exon 2
--------------------------gagccttggtgaatagaagaaaccctttttcattgtagggaacaaatccagtttt-tttctaccctttatatgtagtaaatgcatttccatgcttatgtagGTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTTCCAGCTATAGTTGGTTGGATGTCAAATGGGGAGAAGCACGTGTTAAGAA
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gtatgtaaaaggggtggatgtgaaacacatttttctctgttaatttctttctttggacctataaggaaaatcttatgctttgttttaaagggtaagatttaatgtatat-cttgaatgatt-tgtagGTTCATGATGTTTCTGATCCAAGAGTGAAAACGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCAAATGGAGAAAAGCGTGTTCTAAAAA
upper sequence: Vv08s0217g00090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G18550.1 (Glycine max), 3'ss of exon 5
-----------------------gagccttggtgaatagaagaaaccctttttca---ttgtagggaacaaatccagtttt-tttctaccctttatatgtagtaaatgcatttccatgcttatgtagGTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTTCCAGCTATAGTTGGTTGGATGTCAAATGGGGAGAAGCACGTGTTAAGAA
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gtatgtaaaaggagtggatgtgaaactcatttttctctgttaatttctttctttggacctataaggaaagtcttatgctttgttttaaagggtaagatttaatgtatat-cttgaatgatt-tgtagGTTCATGATGTTTCTGATCCAAGAGTAAAAACGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCAAATGGAGAAAAGCGTGTTCTAAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715177|gb|FC064855.1|FC064855EST: GTGCCCTTAGTGGCTTGTATCATAAACGATTCATCTTCTATGATGTAGAG GTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTT
genomic: GTGCCCTTAGTGGCTTGTATCGTAAACGATTCATCTTCTATGATGTAGAGgtaagccaca ... gcttatgtagGTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atccagtttttttctaccctttatatgtagtaaatgcatttccatgcttatgtagGTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTTCCAGCTATAGTTGGTTGGATGTCAAATGGGGAGAAGCACGTGTTAAGAA
tttatatgtagtaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagccttggtgaatagaagaaaccctttttcattgtagggaacaaatccagtttttttctaccctttatatgtagtaaatgcatttccatgcttatgtagGTTCATGATGCTTCTGACAAAGTGGTGAAGAAGTTAGGAGTTGATGCACTTCCAGCTATAGTTGGTTGGATGTCAAATGGGGAGAAGCACGTGTTAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-agccttg
- - - - - gaataga
- - - - - - - - -agaaacc
- - - - - - - - - - - - - - - - - - - ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc