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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtggttaactagctccatccccttgattatatttttcaagtcctattccaatgataactgttgggatgtaatggatttcttggttgcagGCAACGCTGGCACCACCAGTGAAGGGGAAGATGTTCAAGGGACTGTGCATTTGTTATACAGTGGTTACGGTGACTTTCTTCAGTGTCGCCATTTCTGGCT

Basic information

species Vitis vinifera
transcript Vv06s0061g01210.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715769|gb|FC066173.1|FC066173
EST:     TTGCTATCATTGCCACAACATTTGGGAATGGTATCATCCCTGAAATTCAG                         GCAACGCTGGCACCACCAATGAAGGGGAAGATGTTCAAGGGACTGTGCATT
genomic: TTGCTATCATTGCCACAACATTTGGGAATGGTATCATCCCTGAAATTCAGgtttgtggtt ... ttggttgcagGCAACGCTGGCACCACCAGTGAAGGGGAAGATGTTCAAGGGACTGTGCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaagtcctattccaatgataactgttgggatgtaatggatttcttggttgcagGCAACGCTGGCACCACCAGTGAAGGGGAAGATGTTCAAGGGACTGTGCATTTGTTATACAGTGGTTACGGTGACTTTCTTCAGTGTCGCCATTTCTGGCT
                 tgataac  putative branch site (score: 2)
                                         tttctt  putative PPT
               aatgataa  TA-rich tract