Sequence
atgc intronic sequence ATGC exonic sequence...atctggatgttctctcatggaaggatgcttcctcatgattattgttttctctgttctaaagttcataatggtaatgtgtctgcattcattttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G04210.1 (Glycine max), 3'ss of exon 5
----atctggatgttctctcatggaaggatgcttcctcatgattattgttttctctgttctaaagttcataatggtaatgtgtctgcattcattttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCC
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ttgcattgttaggtgaacacttttaaggaaatttcaatttctcttctctgttatcttctcc----cttatattggatatcttatagatatatttttaatgtcagGTGAGTCACCATCCCCCAATGAGTGCTGGGCATGCTGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTAAAGACTAAGTTTTTGGGAAATTCTG
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 5
---atctggatgttctctcatggaaggatgcttcctcatgattattgttttctctgttctaaagttcataatggtaatgtgtctgcattcattttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCC
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ttattttgtaaggtgacttgggacttagctcacaacaaagtatatgggttttgttactttt---ctctctctgtgtatataaataaaatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTG
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G06690.1 (Glycine max), 3'ss of exon 5
--atctggatgttctctcatggaaggatgcttcctcatgattattgttttctctgttctaaagttcataatggtaatgtgtctgcattcattttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCC
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ttattttgttagg-tgacttgggacttagctcacaacaaagtat-atgggttttgttacttttctctctgtgtatatataaataaaatattttaaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAACTCTG
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 3'ss of exon 5
atctggatgttc-tctcatggaaggatgctt-cctcatgattattgttttctctgttctaaagttcataatggta--atgtgtctgcattcattttgattt--cagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCC
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gtgcggctatacatctcattgt----tactcacatagtggataatgactaattcgcaataagtcatatatttgtttcatttataataagttactgtaatttttcagGTTAGCCATCATCCACCAATGAGTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGACATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133371|gb|CB918710.1|CB918710EST: AGACTTATGAAATGGCTAATCATGGTGGAATAACATTTATTTCAGAGCAA GTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTC
genomic: AGACTTATGAAATGGCTAATCATGGTGGAATAACATTTATTTCAGAGCAAgtaggttttt ... ttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTC
EST:
gi|30252454|gb|CB970005.1|CB970005EST: AGACTTATGAAATAGCTAATCATGGTGGAATAACATTTATTTCAGAGCAA GTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTC
genomic: AGACTTATGAAATGGCTAATCATGGTGGAATAACATTTATTTCAGAGCAAgtaggttttt ... ttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctctgttctaaagttcataatggtaatgtgtctgcattcattttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCC
ttcatttt CT-rich tract
attcattttgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atctggatgttctctcatggaaggatgcttcctcatgattattgttttctctgttctaaagttcataatggtaatgtgtctgcattcattttgatttcagGTCAGCCATCATCCTCCGATGAGTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCC
- ctggatg
- - - - - - -ctcatgg
- - - - - - - - - - - - - -cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattca