Sequence
atgc intronic sequence ATGC exonic sequencegtaagagtgtggtgagaaagttcccctgggtatgatttgcatcgctcagaattgctcatgataagattcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os08g44530.1 (Oryza sativa), 3'ss of exon 5
gtaagagtgtggtgagaaagttcccctgggtatgatttgcatcgctcagaattgctca----tgataagattcttgg--cagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
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-----------gtgggttatcttcctcttgtctgctttttaatgtcttggatagacaaatgctgattgttttcttctttcagGTCTGTAGGTCTGCAATTAACTCTTGATGATTTTCAGAAGGTCAGTGACCAAGTTCCTTTCCTTGCGGACCTTAAGCCTAGTGGCAAATATGTCATGGAG
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AC234528.1_FGT005 (Zea mays), 3'ss of exon 5
gtaagagtgtggtgagaaagttcccctgggtatgatttgcatc---gctcagaattgctca--tgataagattcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
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------gtgcgttatca---tcctcttgcatgtgctttctacttaggttgaaaaaaactcatctggttgtcttcttt-cagGTCCGTTGGTTTGCATTTGACTCTTGATGATTTCCAGAAGGTCAGTGACCAAGTTCCTTTCCTTGCAGACCTCAAGCCCAGTGGCAAATATGTCATGGAG
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G014069_T01 (Zea mays), 3'ss of exon 5
gtaagagtgtggtgag--aaagttcccctgggtatgatttgcatc---gctcagaattgctcatgataagattcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
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-----------gtgaattactatcttcttgcatgtgctttctacttaggttgataaaagctcattggttgtcttctttcagGTCCGTAGGTCTGCATTTGACTCTTGATGATTTCCAGAAGGTTAGTGACCAAGTTCCTTTCCTTGCAGACCTCAAGCCCAGTGGCAAATATGTCATGGAA
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G27810.1 (Glycine max), 3'ss of exon 5
gtaag---agtgtggtgagaaagttcccctgggtatg-atttgcatcgctcagaattgctcatgataagattcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
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gtgagtgaagtttgatgccagagatcctatttatatacaataaccctgagatgaaacctcaagtgtaatgattttggcagGTCTGTTGGCATTGATTTGACTCTTGATGATTTTCAGAAGGTTAGCGATGAGGTTCCTTTTATTGCAGATCTTAAGCCTAGTGGGAAATATGTCATGGAA
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G23940.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagagtgtggtgagaaagttcccctgggtatgatttgcatcgctcagaattgctcatga-taagattcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
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gtgacagattgttatgatgtttcttattattaccatggaaagcaatggaccgaagtaatgaatggaaatgatttcagGTCTGTTGGTTTGGAGTTGACTCTTGACGATTTTCAGAAAGTTAGCGATGCGGTTCCATTTCTAGCAGATCTTAAACCCAGTGGGAAGTATGTTATGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71885531|gb|DT034586.1|DT034586EST: GCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAG GTCTGTTGGTCTACAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGA
genomic: GCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAGgtaagagtgt ... ttcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcccctgggtatgatttgcatcgctcagaattgctcatgataagattcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
ttctt CT-rich tract
tatgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtaagagtgtggtgagaaagttcccctgggtatgatttgcatcgctcagaattgctcatgataagattcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGAGGTTCCATTCCTTGCTGATCTTAAGCCCAGTGGCAAATACGTCATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA