1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCATCCTAGGCGCTAATTTTCGATGGAATTCCAATTTTGTTATGCATTTTCT
species | Vitis vinifera |
transcript | Vv05s0049g01310.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110690588|gb|EE067820.1|EE067820
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110691773|gb|EE070259.1|EE070259
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110693797|gb|EE070342.1|EE070342
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110397687|gb|EC963510.1|EC963510
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110724784|gb|EE100916.1|EE100916
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|71879325|gb|DT028380.1|DT028380
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|77588138|gb|DV223280.1|DV223280
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110385712|gb|EC950261.1|EC950261
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|71883824|gb|DT032879.1|DT032879
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110375750|gb|EC940763.1|EC940763
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|30296294|gb|CB973088.1|CB973088
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGCTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|77580220|gb|DV219008.1|DV219008
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110689055|gb|EE064943.1|EE064943
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|34320490|gb|CF373244.1|CF373244
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110414454|gb|EC980286.1|EC980286
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110379010|gb|EC944177.1|EC944177
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|34416610|gb|CF415364.1|CF415364
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110417800|gb|EC983883.1|EC983883
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110695806|gb|EE074247.1|EE074247
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110708991|gb|EE084059.1|EE084059
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCANGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|27584222|gb|CB006917.1|CB006917
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|71868255|gb|DT017310.1|DT017310
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110731703|gb|EE106347.1|EE106347
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCAEST: gi|110705265|gb|EE081950.1|EE081950
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
accataacccatagaactgctcaagtctaatacattcattaatatgcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCATCCTAGGCGCTAATTTTCGATGGAATTCCAATTTTGTTATGCATTTTCT
cattaat putative branch site (score: 3)
taatacattcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCATCCTAGGCGCTAATTTTCGATGGAATTCCAATTTTGTTATGCATTTTCT
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