Sequence
atgc intronic sequence ATGC exonic sequencegtactttctttatctggcaatgtggggtgcttctcttcaattttacttcatttgataattagattttcacttcaaaatggttcccagATCAAAAAGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G28970.1 (Glycine max), 3'ss of exon 6
gtactttctttatctggc--aatgtggggtgcttctcttcaattttacttcatttgataa--ttagattttcacttcaaaatggttcccagATCAAAAAGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAG
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gtacttaatactatggacatagtttgctgagttcatctcttatggtgtcaatattgatcaatttacagaactactttttgctgtcaaacagATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTGAGAAGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAG
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G38770.1 (Glycine max), 3'ss of exon 6
gtactttctttatctggc--aatgtggggtgcttctcttcaattttacttcatttgataa--ttagattttcacttcaaaatggttcccagATCAAAAAGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAG
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gtacttaatactatggacatagtttgctgagttcatctcttatggtgttaatatcgatcaatttacagagctactttttgatgtcaaacagATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTGAGAAGAAAATATCGTGTTTCTGGATTGACTTCTCAACCAACCAGAG
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 5
gtactttctttatctggcaatgtggggtgcttctcttcaattttacttcatttgataattagattttcacttcaaaatggttcccagATCAAAAAGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAG
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gtacttatatgaacagagcttgctaagttcaattttt--gtattaatac-tataaaactcacagagctactttaagatgtctaacagATTAAGAAAGCCCTTAGAGGAGTTAAAGTCGAAGTAACCCACCGAGGGAGTGTTAGAAGAAAGTATCGAGTTTCTGGTTTGACTTGTCAACCAACCAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttcaattttacttcatttgataattagattttcacttcaaaatggttcccagATCAAAAAGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAG
atttgat putative branch site (score: 5)
ttccc putative PPT
aattttacttcatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactttctttatctggcaatgtggggtgcttctcttcaattttacttcatttgataattagattttcacttcaaaatggttcccagATCAAAAAGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA