1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatctcttttgctgtcacattttgactcttcccatgcagtgtttatgatcataagccttttgttttttatccaaccttgacatgcaattttgtatatagATGATTGGGACGACAACAAGGTTACCAGCAACTCAACGGTTAGTTGAGATTAAAACTGTTGCAGAGCAATTACATTTCAAGATATCAACCTTATTATTGC
species | Vitis vinifera |
transcript | Vv04s0044g01720.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
atgatcataagccttttgttttttatccaaccttgacatgcaattttgtatatagATGATTGGGACGACAACAAGGTTACCAGCAACTCAACGGTTAGTTGAGATTAAAACTGTTGCAGAGCAATTACATTTCAAGATATCAACCTTATTATTGC
ccttgac putative branch site (score: 4)
ttttgttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatctcttttgctgtcacattttgactcttcccatgcagtgtttatgatcataagccttttgttttttatccaaccttgacatgcaattttgtatatagATGATTGGGACGACAACAAGGTTACCAGCAACTCAACGGTTAGTTGAGATTAAAACTGTTGCAGAGCAATTACATTTCAAGATATCAACCTTATTATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
tcatctc
- - - - - - ctgtcac
- - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - -catgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca