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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatgcatcttgtatttgacattatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAGAG

Basic information

species Vitis vinifera
transcript Vv02s0236g00140.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32246390|gb|CD712209.1|CD712209
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|352789785|gb|FQ478600.1|FQ478600
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|27581540|gb|CB004235.1|CB004235
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|27580184|gb|CB002879.1|CB002879
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|349822445|gb|FQ412709.1|FQ412709
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|71873772|gb|DT022827.1|DT022827
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|349820979|gb|FQ408687.1|FQ408687
EST:     GTCACTAAATGTTTTCCATCCNAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|349819279|gb|FQ412173.1|FQ412173
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|71872712|gb|DT021767.1|DT021767
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCCAGCTCTATGATCTGGATAGCACAGGAT
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGAT
EST: gi|349826413|gb|FQ417910.1|FQ417910
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|110418331|gb|EC984477.1|EC984477
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|32245760|gb|CD711579.1|CD711579
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|349832733|gb|FQ422257.1|FQ422257
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|30131430|gb|CB916769.1|CB916769
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|110382953|gb|EC947286.1|EC947286
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|351019013|gb|FQ426512.1|FQ426512
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|71863154|gb|DT012209.1|DT012209
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCA
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCA
EST: gi|351055152|gb|FQ440491.1|FQ440491
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|33401878|gb|CF207505.1|CF207505
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|71877098|gb|DT026153.1|DT026153
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|351014198|gb|FQ434787.1|FQ434787
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|349815321|gb|FQ400476.1|FQ400476
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|110716343|gb|EE091242.1|EE091242
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|351038650|gb|FQ464516.1|FQ464516
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|30297304|gb|CB974098.1|CB974098
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAATATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|34549400|gb|CF517632.1|CF517632
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|110699550|gb|EE076647.1|EE076647
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
EST: gi|45770983|gb|CN006835.1|CN006835
EST:     GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT                         TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcaattgttctcagtatattttaatgcatcttgtatttgacattatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAGAG
                                   tatttgacattatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatgcatcttgtatttgacattatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA