Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcatgactgaaacttcacttgtgtgaatcaatggaaacttctcagttgtcttacctctgggttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAGAAGAATTTTCTACTTCACTAAATTCCCATTCACAGCAACAAGTGCTTCA

Basic information

species Vitis vinifera
transcript Vv02s0025g02640.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384986|gb|EC949461.1|EC949461
EST:     TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCT                         GTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCC
genomic: TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCTgtaagttcat ... ttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCC
EST: gi|110379290|gb|EC944475.1|EC944475
EST:     TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCT                         GTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
genomic: TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCTgtaagttcat ... ttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
EST: gi|110376860|gb|EC941936.1|EC941936
EST:     TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCT                         GTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
genomic: TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCTgtaagttcat ... ttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
EST: gi|110422103|gb|EC988415.1|EC988415
EST:     TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCT                         GTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
genomic: TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCTgtaagttcat ... ttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
EST: gi|110372636|gb|EC936820.1|EC936820
EST:     TCCATTTGAAGAGGATCCAGTGTCCCAACAGCCATGTTTTTCGGATATCT                         GTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
genomic: TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCTgtaagttcat ... ttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
EST: gi|110429787|gb|EC996293.1|EC996293
EST:     TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCT                         GTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
genomic: TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCTgtaagttcat ... ttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
EST: gi|27755371|gb|CB036126.1|CB036126
EST:     TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCT                         GTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG
genomic: TCCATTTGAAGAGGATCCAGTGTCCAAACAGCCATGTTTTTCGGATATCTgtaagttcat ... ttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtgtgaatcaatggaaacttctcagttgtcttacctctgggttgtttacagGTTCCATGGCAAATCCCAACTCCAGCATCTGTCATAAACTACAAGCCTGAGAAGAATTTTCTACTTCACTAAATTCCCATTCACAGCAACAAGTGCTTCA
                               gtcttac  putative branch site (score: 3)
         aatcaat  TA-rich tract