Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaataatatcaatataatataaaacaaccaaaacaattttatattgaatttatctcacattttctcatcataaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACACATCAGTTCCCCCGACAG

Basic information

species Vitis vinifera
transcript Vv01s0011g06290.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56688100|gb|CX126003.1|CX126003
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688146|gb|CX126049.1|CX126049
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688532|gb|CX126435.1|CX126435
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|30324780|gb|CD008042.1|CD008042
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|110361763|gb|EC925259.1|EC925259
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|110382161|gb|EC938649.1|EC938649
EST:     ATCACGGGGACACAGTGGAGCTTGTAGAACAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688821|gb|CX126724.1|CX126724
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688240|gb|CX126143.1|CX126143
EST:     ATCACGGGGACACAGTGGAGCTCGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|110405384|gb|EC970925.1|EC970925
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|30330531|gb|CD013793.1|CD013793
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|110378747|gb|EC943895.1|EC943895
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|30128027|gb|CB913366.1|CB913366
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|30127523|gb|CB912862.1|CB912862
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|34542274|gb|CF510506.1|CF510506
EST:     ATCACGGGGACACAGTGGAGCTTGTAGAACAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|110427573|gb|EC994020.1|EC994020
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688741|gb|CX126644.1|CX126644
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|30125391|gb|CB910730.1|CB910730
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688020|gb|CX125923.1|CX125923
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|349811174|gb|FQ406162.1|FQ406162
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAN                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|71867743|gb|DT016798.1|DT016798
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|110701614|gb|EE079386.1|EE079386
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|30126050|gb|CB911389.1|CB911389
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688831|gb|CX126734.1|CX126734
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688837|gb|CX126740.1|CX126740
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688383|gb|CX126286.1|CX126286
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688239|gb|CX126142.1|CX126142
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|110385343|gb|EC949857.1|EC949857
EST:     ATCACGGGGACACAGTGGAGCTTGTAGAACAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|27586836|gb|CB009531.1|CB009531
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
EST: gi|56688885|gb|CX126788.1|CX126788
EST:     ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAG                         GCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC
genomic: ATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGgcaataatat ... aaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaaaacaattttatattgaatttatctcacattttctcatcataaatctccagGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACACATCAGTTCCCCCGACAG
                         atctcac  putative branch site (score: 3)
                                                tctcc  putative PPT
        aattttatattgaatt  TA-rich tract