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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcacttattctttacgctattttgtttccttgaatttattgggttccattgttgcttgtagaagttccttttggttgaaatgagtttaccaaatgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGTTGACAAAATTTGGTTTGAGCGTTTTTCAATCTCAGTTACAGAACAAGTG

Basic information

species Vitis vinifera
transcript Vv01s0011g02990.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G22510.1 (Glycine max), 3'ss of exon 5
gtatgatcacttattctttacgctattttgtttccttgaatttattgggttccattgttgcttgtagaagttccttttggttgaaatgagtttaccaaatgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGTTGACAAAATTTGGTTTGAGCGTTTTTCAATCTCAGTTACAGAACAAGTG--
                            | ||||| ||     |     | | |   ||  ||    |  || || |   || || | ||||| |    |||| |  |||||||||| || ||||||||||||||| |||||||   || ||||||  ||  || ||  | | | |   | |        |  || |   |     ||   
---------------------------gtatttccgtgttcccaacaattgcaacaattaattc---attttactgtcaatttaa-taagttttct---tgttttatagGAATTTGGTTCACAGGACAGCTTTATTTCCTGGGGCTATG-GCAAGGCAGTGAACTAATATGGTTCTTCACCTCAGCTGGGCA-AGCTGATGTTTTTGTAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386678|gb|EC951294.1|EC951294
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
EST: gi|110389966|gb|EC954845.1|EC954845
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
EST: gi|34545444|gb|CF513676.1|CF513676
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
EST: gi|110694266|gb|EE071224.1|EE071224
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCANGACAGCTTTATTGCCTGGGGTGGTGAGCAA
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAA
EST: gi|34543200|gb|CF511432.1|CF511432
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgcttgtagaagttccttttggttgaaatgagtttaccaaatgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGTTGACAAAATTTGGTTTGAGCGTTTTTCAATCTCAGTTACAGAACAAGTG
                                          aaatgttat  TA-rich tract