Sequence
atgc intronic sequence ATGC exonic sequence...ttttcattggtggaataccttttctgctgttttcctgtacaactttattgagaaggtagcagtgaattttttagtcattcagccttgtttctgtattcagGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G37250.2 (Glycine max), 3'ss of exon 6
-ttttcattggtggaa-taccttttctgctgttttcctgtacaactttattgagaaggtagcagtgaattttttagtcattcagccttgtttctgtattcagGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTA
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gtttcaaatattccagctaatcgactagctgtttcctttcccaacataaaaaaataagt--taactatagcaatcatttttaatacttttgaaaattttcagGTTGGCAGCCACTATCATTTTATTGAAGTAAATCCTTATTTAACCTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCTGGGAATGCCA
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G27840.1 (Glycine max), 3'ss of exon 5
------ttttcattggtggaataccttttctg-ctgttttcctgtacaactttattgagaaggtagcagtgaattttttagtcattcagccttgtttctgtattcagGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTA
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aataaattttaggagttcaaatatccaaacaaattgatttcttgt-taggttttccaagtgaattgaagcaaacatt---gcctaatagttatgaa---aaattcagGTTGGTAGCCACTATCATTTTATTGAAGTAAATCCCTACTTGACTTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCAGGAACTGCTG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G10850.1 (Glycine max), 3'ss of exon 4
------ttttcattggtggaataccttttctg-ctgttttcctgtacaactttattgagaaggtagcagtgaattttttagtcattcagccttgtttctgtattcagGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTA
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aataaagttcaggagttcaaatatccaaacaaattggttttttgt-tagccttttcaagttaactgaagcaaacatt------gcctaatatttatggaaattttagGAGGGAAGCCACTATCATTTTATTGAAGTGAATCCCTACTTGACTTTTGATCGAAGGAAATCATATGGCATGCGCCTCAATATATCTGCAGGGACTGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgagaaggtagcagtgaattttttagtcattcagccttgtttctgtattcagGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTA
ccttgtttct CT-rich tract
aattttttagtcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttcattggtggaataccttttctgctgttttcctgtacaactttattgagaaggtagcagtgaattttttagtcattcagccttgtttctgtattcagGTTGGTAGTCACTATCACTTCATCGAGGTGAACCCTGCCTTGGTCTTTGATCGAAGGAAAGCACATGGCATGCGGCTCAATATACCAGCAGGGACAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -tggtgga
- - - - - - - - - - - tctgctg
- - - - - - - - - - - - - - - -ttcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcag