Sequence
atgc intronic sequence ATGC exonic sequence...cataattttatttatgttgacccctgaggtaatggatagaggctgtatggtttttgtttggcataatctgaagttaatgttcgccattaacattctgcagGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G38830.1 (Glycine max), 3'ss of exon 3
------cataatttt---atttatgttgacccctgaggtaatggatagaggctgtatggtttttgtttggcataatctgaagttaatgttcgccattaacattctgcagGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATA
|||| || ||| | | || | || | || | | || ||| ||| | |||| | | | | | | | || ||||||||||||| | || || | || ||||| |||||||| || || | | | || || || || || ||||||||||||||| |||||||||||||
gaggttaataaattaacaattcgtcccaagtcccaac-tatttctgaggtgtttagtgcactttatttttcgcg--ctgatgatgttact-gtcgtaaa-----tgcagGTTGTAGCCAATACAATAAAGTCATGCTTAGATGAGCTGCCCGGCTTTCCACGTACGCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATA
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G28520.1 (Glycine max), 3'ss of exon 4
cataattttatttatgttgacccc-tgaggtaatggatagaggctgtatggtttttgtttggcataatctgaagttaatgttcgccattaacatt-ctgcagGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATA
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ggcaactttggtt-tatagattgtattttacaattcagagttattatggaggtgtcatccaaactca-ctattaatgatgattgatgttgttcttattgcagGTTGTGGCCCAAACAATCAGGTCATGCTTAGATGAGTTGCCTGGCTTTCCACGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATA
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G41400.2 (Glycine max), 3'ss of exon 4
cataattttatttatgttgacccctgaggtaatggataga--ggctgtatggtttttgtttggcataatctgaagt--taatgttcgccattaacattctgcagGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATA
| ||| | | || || | | | | | | | ||| ||| | ||| || | ||| | ||| | | | | || ||||||| || | || |||| || ||||| |||||||| || || | | | || || || || || ||||||||||||||| |||||||||||||
----aggttactaaaattaacaattcattcgaagtcccaactatttctgaggtgtttagtgcacattattttgagtgctgatgatggtactgtcctaaatgaagGTTGTGGCCAATACAATTAAGTCATGCTTAGATGAGCTGCCCGGCTTTCCACGTACGCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatggtttttgtttggcataatctgaagttaatgttcgccattaacattctgcagGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATA
cattaac putative branch site (score: 2)
tttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cataattttatttatgttgacccctgaggtaatggatagaggctgtatggtttttgtttggcataatctgaagttaatgttcgccattaacattctgcagGTTGTAGCACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATA
- - - - - - - - -tgacccc
- - - - - - - - - - - - - - - - tggatag
- - - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattaa