Sequence
atgc intronic sequence ATGC exonic sequence...gtaaaaaagtagttcaatttaaagtttagggtttagcatatgatactccgacccttcataatgttattaatatcttacttctctttgcttaaatgtacagGAGGAAGACAAGATCGCACTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g08710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ23803 (Selaginella moellendorffii), 3'ss of exon 4
------------------------gtaaaaaagtagt-tcaatttaaagtttagggt--ttagcatatgata-ctccgacccttcataatgttattaatatcttacttctctttg-------cttaaatgtacagGA--GGAAGAC--AAGATCGCA-CTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGG
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gtgagtacctttgtgttctttcttgttggcattctgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcatcgcttttttctttgacatttgcttcgttgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGGCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCGCAGG
upper sequence: Vv17s0000g08710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ21443 (Selaginella moellendorffii), 3'ss of exon 5
------------------------gtaaaaaagtagt-tcaatttaaagtttagggt--ttagcatatgata-ctccgacccttcataatgttattaatat--cttacttctct-----ttgcttaaatgtacagGA--GGAAGAC--AAGATCGCA-CTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGG
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gtgagtacctttgtgttctttcttgttggcattccgtgtctctttctcgttatggctagtgggcgtgccatggctttgttccttctttgtgtccttttcattgcttttttctttgacatttgcttcgctgtgctggacagGAGAACCAAAAGTCGAATCTCGCGCAATCCACCGGCCTGGACCCAAAGCAGATCAACAACTGGTTTATAAACCAGCGAAAGCGGCACTGGAATCCACAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458094|gb|CD799268.1|CD799268EST: AAGCCCTTCTTGATTGGTGGAATATTCACTATAAATGGCCATATCCAACG GAGGAAGACAAGATCGCACTGGCTGAATCAACACGCCTGGACCAGAAGCAG
genomic: AAGCCCTTCTTGATTGGTGGAATATTCACTATAAATGGCCATATCCAACGgtaaatattt ... aaatgtacagGAGGAAGACAAGATCGCACTGGCTGAATCAACAGGCCTGGACCAGAAGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctccgacccttcataatgttattaatatcttacttctctttgcttaaatgtacagGAGGAAGACAAGATCGCACTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGG
cttctctttgctta CT-rich tract
ttcataatgttattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaaagtagttcaatttaaagtttagggtttagcatatgatactccgacccttcataatgttattaatatcttacttctctttgcttaaatgtacagGAGGAAGACAAGATCGCACTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-taaaaaa
- - - - - - - - - - - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - -cccttca