1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggccttatttattgagacatttttttgtgttgcttttgcgatcttctccttctccttatacttgtttattcatttcttttgaccattcttctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTATACAGTTGATTGCAGAGATTCCTGTGGTGAAATATATGTTGATTTGCAGA
species | Vitis vinifera |
transcript | Vv17s0000g01270.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACNNNN NNNTTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGTATTGCATTTTATEST: gi|351053900|gb|FQ441666.1|FQ441666
genomic: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACAAAAgtacaataaa ... tctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTAT
EST: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACAAAA AAGTTGATCAACGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTATEST: gi|110421721|gb|EC988021.1|EC988021
genomic: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACAAAAgtacaataaa ... tctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTAT
EST: TGTTGTAGTCATCAGTTCTTGTTCCTTTGCAACNNNN NNNTTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGTATTGCATTTTATEST: gi|351035749|gb|FQ463594.1|FQ463594
genomic: TGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACAAAAgtacaataaa ... tctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTAT
EST: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACNNNN NNNTTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTATEST: gi|110424420|gb|EC990781.1|EC990781
genomic: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACAAAAgtacaataaa ... tctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTAT
EST: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACNNNN NNNTTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGTATTGCATTTTAT
genomic: ATGACAGATTTGATGTTGTAGTCATCAGTTCTTGCTCCTTTGCAACAAAAgtacaataaa ... tctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTAT
tctccttctccttatacttgtttattcatttcttttgaccattcttctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTATACAGTTGATTGCAGAGATTCCTGTGGTGAAATATATGTTGATTTGCAGA
ttttgac putative branch site (score: 3)
ccattcttctacccc CT-rich tract
tttattcatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggccttatttattgagacatttttttgtgttgcttttgcgatcttctccttctccttatacttgtttattcatttcttttgaccattcttctaccccagAAATTGATCAATGAAAAGTGCCGAAAGGTATCAAAGCGCATTGCATTTTATACAGTTGATTGCAGAGATTCCTGTGGTGAAATATATGTTGATTTGCAGA
- - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattct