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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacatgcatagccagataatcctactatcttgttctgtcttcaaatgcttgtccatctgttcttttcactgaagttagtttttcaacttgcattctggatagATTTCCAAAGGGCTTTTGGACAAGTATGGTCCTGGGAGGGTTATTGATACTCCAATCACAGAG

Basic information

species Vitis vinifera
transcript Vv17s0000g00690.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00690.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os09g33500.1 (Oryza sativa), 3'ss of exon 4
gtaagacatgcatagccagataatcctactatcttgttctgtcttcaaatgc-ttgtccatctgttcttttcactgaagttagtttttcaacttgcattctgg-atagATTTCCAAAGGGCTTTTGGACAAGTATGGTCCTGGGAGGGTTATTGATACTCCAATCACAGAG
        ||   ||  | | |||  || ||  |    || || |||  | |  |||  |  | ||   |   || |   | |||  | || | | ||||||    ||||||| || ||  |  | |||||||||||||||| ||||||| | ||||| ||||||||||||
-----gtgtgtgaagttaaaaaatattagtagttgtgcctttcctcaggtccgctgtaaacgtattagct---cttatcgttgttcatgaagt-gtattctgttgcagATTTCAAAGGGCTTGCTTGACAAGTATGGTCCTGAGAGGGTTCTGGATACACCAATCACAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtccatctgttcttttcactgaagttagtttttcaacttgcattctggatagATTTCCAAAGGGCTTTTGGACAAGTATGGTCCTGGGAGGGTTATTGATACTCCAATCACAGAG
                           ttagttttt  TA-rich tract