Sequence
atgc intronic sequence ATGC exonic sequence...aggtctaagaaatttatatgttggtaaaattgaaaattttggtttgcaatgtaaaacagggtaatttcagtcattttgttgttcttgacccttgagttagATATTGCGGGGCTGCAGAATGAAGATGGGTCATTTTCAGGTGACATGTGGGGCGAAATTGATACGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0024g00080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G11710.1 (Glycine max), 3'ss of exon 4
---aggtctaagaaatttatatgttggtaaaattg-aaaattttggtttgcaatgtaaaacagggtaatttcagtcattttgttgttcttgacccttgagttagATATTGCGGGGCTGCAGAATGAAGATGGGTCATTTTCAGGTGACATGTGGGGCGAAATTGATACGCG
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tgtaaattttagta--cagtttgatactaaaactataatagtaaaatttataataaactagaaaatatactggatc-ttgtgtt-ttcttactatttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
upper sequence: Vv15s0024g00080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 3
aggtctaagaaatttatatgttggtaaaattgaaaattttggtttgcaatgta--aaacagggtaatttcagtcattttgttgttcttgacccttgagttagATATTGCGGGGCTGCAGAATGAAGATGGGTCATTTTCAGGTGACATGTGGGGCGAAATTGATACGCG
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gaaagaaagaattttagtagtt--tgatactaagactacaatagtaaaatttaataaactaggaagtataccggatcttgtgtttcttactatttatctcagATATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACACG
upper sequence: Vv15s0024g00080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G12210.2 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------------------------------aggtc----taagaaatttatatgttggtaaaattgaaaattttggtttgcaatgtaaaacagggtaatttcagtcattttgttgttcttgacccttga----gttagATATTGCGGGGCTGCAGAATGAAGATGGGTCATTTTCAGGTGACATGTGGGGCGAAATTGATACGCG
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gtatccttttgcacttagctttttgtcaatgtcactaactcgttcttcttcacaaatagtcatggtggaactttcatatgttaattaa-tcaatgatgttaaacaagaaggaaaaaccctgccttatagtagatattattatgttttcctatatacaatattagATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaatgtaaaacagggtaatttcagtcattttgttgttcttgacccttgagttagATATTGCGGGGCTGCAGAATGAAGATGGGTCATTTTCAGGTGACATGTGGGGCGAAATTGATACGCG
gttcttgac putative branch site
ccctt CT-rich tract
taatttca TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggtctaagaaatttatatgttggtaaaattgaaaattttggtttgcaatgtaaaacagggtaatttcagtcattttgttgttcttgacccttgagttagATATTGCGGGGCTGCAGAATGAAGATGGGTCATTTTCAGGTGACATGTGGGGCGAAATTGATACGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - aagaaat
- - - - - - - - - - - ggtaaaa
- - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - gtaaaac
