1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaagtcattattcatttattgagtattctgcatttaaaatgtttcaggctacaactctttccatttatgttttctgatgtttcagtatcacttatgcagCCCCTCAGTATTTTATGCCGCTCCTTAAGGGACATAGATACATATACAACGGGGTTCCCTTGTGGTATTGGCCAAGGTCAAACAAACATTTTTCGAGCTG
species | Vitis vinifera |
transcript | Vv14s0068g02020.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATAAAAGATATAGAAGCTTCAAAG CCCCTCAGTATTTTATGCCGCTCCTTAAGGGACATAGATACATATACAACGEST: gi|26262195|gb|CA813258.1|CA813258
genomic: AATAAAAGATATAGAAGCTTCAAAGgcaaggaaat ... acttatgcagCCCCTCAGTATTTTATGCCGCTCCTTAAGGGACATAGATACATATACAACG
EST: AATAAAAGATATAGAAGCTTCAAAG CCCCTCAGTATTTTATGCCGCTCCTTAAGGGACATAGATACATATACAACG
genomic: AATAAAAGATATAGAAGCTTCAAAGgcaaggaaat ... acttatgcagCCCCTCAGTATTTTATGCCGCTCCTTAAGGGACATAGATACATATACAACG
caggctacaactctttccatttatgttttctgatgtttcagtatcacttatgcagCCCCTCAGTATTTTATGCCGCTCCTTAAGGGACATAGATACATATACAACGGGGTTCCCTTGTGGTATTGGCCAAGGTCAAACAAACATTTTTCGAGCTG
ttctgat putative branch site (score: 3)
atttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagtcattattcatttattgagtattctgcatttaaaatgtttcaggctacaactctttccatttatgttttctgatgtttcagtatcacttatgcagCCCCTCAGTATTTTATGCCGCTCCTTAAGGGACATAGATACATATACAACGGGGTTCCCTTGTGGTATTGGCCAAGGTCAAACAAACATTTTTCGAGCTG
caaagtc
- - - - - - - - - - - - - - ctgcatt
- - - - - - - - - - - - - - - - - -taaaatg
- - - - - - - - - - - - - - - - - - - - - - -caggcta