1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aggatgggtatccaaaaagacttcgttattacttttcctagtaaattatttttataaaattgatttttatggattttttattttatttttttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCTGGAGAAGATGCATATACCATGAGTGAAGCCAAGGAAGAAGCTGTCCGC
species | Vitis vinifera |
transcript | Vv14s0068g00220.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAG TTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCEST: gi|110687972|gb|EE065988.1|EE065988
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAG TTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCEST: gi|87586086|gb|DY474543.1|DY474543
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
EST: AGAAAATAAAAG TTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCEST: gi|110712478|gb|EE090143.1|EE090143
genomic: AGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAA TTTGGGAAAGGATTATTTCAAATTCCGGACCA-GTAATTAGCTACCTTEST: gi|110421499|gb|EC987796.1|EC987796
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTT
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAG TTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCEST: gi|30127269|gb|CB912608.1|CB912608
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAG TTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCEST: gi|110712589|gb|EE090382.1|EE090382
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAA-TAAAAG TTTGGGGAAAGGATTATTTCAAATTCCTGACCAATTACTTAACTACCTTTTEST: gi|110729402|gb|EE105325.1|EE105325
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGG-AAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTT
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAG TTTGGGAAAGGATTATTTCAAATTCCTGAACAAGTACTTAGCTACCTTTTCEST: gi|110390588|gb|EC955507.1|EC955507
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
EST: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAG TTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
genomic: CAGAGAGCTCTCTATCTCAACATCTCTAATATTTTAAAAGAAAATAAAAGgtagaatctg ... ttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTC
ttatttttataaaattgatttttatggattttttattttatttttttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCTGGAGAAGATGCATATACCATGAGTGAAGCCAAGGAAGAAGCTGTCCGC
aattgat putative branch site (score: 4)
ttttttattttatttt putative PPT
tttataaaattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatgggtatccaaaaagacttcgttattacttttcctagtaaattatttttataaaattgatttttatggattttttattttatttttttatttatagTTTGGGAAAGGATTATTTCAAATTCCTGACCAAGTACTTAGCTACCTTTTCTGGAGAAGATGCATATACCATGAGTGAAGCCAAGGAAGAAGCTGTCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
-ggatggg
- - - - - - -aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat