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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcagtgctgtaactctataattagctttaaactgattctgtacttcattaattttgtcatatcctcctactaatgaagccttttgtgtttcagGTGTCAATAGCCCTCTTAATCTTTGGTCCAGTTTACATGCAACTGTTTTTGGTTGAGACAGTTAGACGGGCTCCTAGGCAGGATCAACATTCAACTGGCT

Basic information

species Vitis vinifera
transcript Vv13s0106g00610.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715805|gb|FC065160.1|FC065160
EST:     TCTTGGGAAATGTTCTAGCACGTTTTCTTCCTGAAAAGTACATTTTTGAG                         GTGTCAATAGCCCTCTTAAT
genomic: TCTTGGGAAATGTTCTAGCACGTTTTCTTCCTGAAAAGTACATTTTTGAGgtatatcagt ... tgtgtttcagGTGTCAATAGCCCTCTTAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacttcattaattttgtcatatcctcctactaatgaagccttttgtgtttcagGTGTCAATAGCCCTCTTAATCTTTGGTCCAGTTTACATGCAACTGTTTTTGGTTGAGACAGTTAGACGGGCTCCTAGGCAGGATCAACATTCAACTGGCT
                             tactaat  putative branch site (score: 1)
                                        ccttttgt  putative PPT
        attaattttgtcatat  TA-rich tract