Sequence
atgc intronic sequence ATGC exonic sequence...ctcaatttccaacataatagtagagattatgtttgatttctcagtgaggctgctttagtttgtttgatttttcagtttggtttcctttacaaattggcagGTATTAAGGTGTATGAGACTAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04450.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G35410.1 (Glycine max), 3'ss of exon 4
ctcaatttccaacataatagtagagattatgtttgatttctcagtgaggctgctttagtttg--tttgatttttcagtttggtttcctttacaaattggcagGTATTAAGGTGTATGAGACTAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCC
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--gagcctttatcatctgatagggtaaagaactggaactttgaggtattaaggtctagtatgaatctgatttctttttactgtatacatggtaattctgcagGTATGAAAGTTTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGTAATCCAAACATAGTGGTGTCCTTGTATGTGTCATC
upper sequence: Vv13s0019g04450.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G04220.2 (Arabidopsis thaliana), 3'ss of exon 3
ctcaatttccaacataatagtagagattatgtttgatttctcagtgaggctgctttagtttgtttgatttttcagtttggtttcctttacaaattggcagGTATTAAGGTGTATGAGACTAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCC
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-gcaaatccttgtctcatt-tagctcttgtg----atctcttaccgttgtttctcaggtgt---taatggttaaga--gattcctcct--------gcagGTGTTAAGTTCTATGAGACCAATGAGAAGGAGCTTCTGTTTGAACCATCAATCAAATGGGCAGGCAATCCCAACATTGTTTTGGTGCTAAAGGTTCTGTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaggctgctttagtttgtttgatttttcagtttggtttcctttacaaattggcagGTATTAAGGTGTATGAGACTAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCC
gtttgat putative branch site (score: 5)
tttgtttgattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcaatttccaacataatagtagagattatgtttgatttctcagtgaggctgctttagtttgtttgatttttcagtttggtttcctttacaaattggcagGTATTAAGGTGTATGAGACTAATGAGAAGGAATTAGCCATGGAACCAGCGATCAAATGGGCTGGCAATCCCAACATAATTTTGGTGCTAAAATGGTTGCC
- - - -tccaaca
- - - - - - - - - - - - - - - - - - - - - - - aggctgc