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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttctccgtttaggctttaacttggtttttgtcattagggtttcaatggaaacacacccatatttacgattcaatgctccatgcatatacagAATGTGAAGAATGGAGGCAAATCGGGGGACCAAGTACCCGGTAGGGAAGAAGAGAATTTCTATGTGAATGCATCGCCGGTTTCCGAGCACCCGGAGGCGG

Basic information

species Vitis vinifera
transcript Vv11s0118g00650.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110420990|gb|EC987277.1|EC987277
EST:     TGACCAAGACCACCTCTACTTCTTCTACTACTCCCACTACCAATTCAAAG                         AATGTGAAGAATGGAGGCAAATCGGGGGACCAAGTACCCGGTAGGGAAGAA
genomic: TGACCAAGACCACCTCTACTTCTTCTACTACTCCCACTACCAATTCAAAGgttggttctc ... gcatatacagAATGTGAAGAATGGAGGCAAATCGGGGGACCAAGTACCCGGTAGGGAAGAA
EST: gi|122690209|gb|EC949505.1|EC949505
EST:     TGACCAAGACCACCTCTACTTCTTCTACTACTCCCACTACCAATTCAAAG                         AATGTGAAGAATGGAGGCAAATCGGGGGACCAAGTACCCGGTAGGGAAGAA
genomic: TGACCAAGACCACCTCTACTTCTTCTACTACTCCCACTACCAATTCAAAGgttggttctc ... gcatatacagAATGTGAAGAATGGAGGCAAATCGGGGGACCAAGTACCCGGTAGGGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtttcaatggaaacacacccatatttacgattcaatgctccatgcatatacagAATGTGAAGAATGGAGGCAAATCGGGGGACCAAGTACCCGGTAGGGAAGAAGAGAATTTCTATGTGAATGCATCGCCGGTTTCCGAGCACCCGGAGGCGG
                      atattta  TA-rich tract