1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgttgattgaattgcagttcttttatttgtaatgttatagctgcaatattgataataaggatgatgttggattgattatcttcctatgtaaattttcagCTCCATCCATGACAATGAAGATGATGGCATTGTTGAGTTCCGACAGTGCATCCGAACCCTTGCTGATAAAGTTGGTATTTTGTCAAGGCAACGTGCTGAG
species | Vitis vinifera |
transcript | Vv11s0037g00730.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGTTGGTTTTGCTGATTCCTTGCGTGCTTTAGCACAATCTTTGACCAA CTCCATCCATGACAATGAAGATGATGGCATTGTTGAGTTCCGACAGTGCATEST: gi|110721282|gb|EE098104.1|EE098104
genomic: GTGGTTGGTTTTGCTGATTCCTTGCGTGCTTTAGCACAATCTTTGACCAAgtaagttagt ... aaattttcagCTCCATCCATGACAATGAAGATGATGGCATTGTTGAGTTCCGACAGTGCAT
EST: GTGGTTGGTTTTGCTGATTCCTTGCGTGCTTTANCACAATCTTTGACCAA CTCCATCCATGACAATGAAGATGATGGCATTGTTGAGTTCCGACAGTGCAT
genomic: GTGGTTGGTTTTGCTGATTCCTTGCGTGCTTTAGCACAATCTTTGACCAAgtaagttagt ... aaattttcagCTCCATCCATGACAATGAAGATGATGGCATTGTTGAGTTCCGACAGTGCAT
aatattgataataaggatgatgttggattgattatcttcctatgtaaattttcagCTCCATCCATGACAATGAAGATGATGGCATTGTTGAGTTCCGACAGTGCATCCGAACCCTTGCTGATAAAGTTGGTATTTTGTCAAGGCAACGTGCTGAG
ttttc CT-rich tract
tatgtaaattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttgattgaattgcagttcttttatttgtaatgttatagctgcaatattgataataaggatgatgttggattgattatcttcctatgtaaattttcagCTCCATCCATGACAATGAAGATGATGGCATTGTTGAGTTCCGACAGTGCATCCGAACCCTTGCTGATAAAGTTGGTATTTTGTCAAGGCAACGTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
ctgttga
- - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - - -ctgcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgga