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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccaaaactagaacacatgcagttaattaattaatcactctctaaccctaattgtttacttaatgatcacaagtttaacccacaaaattttattgcaatttagGTCATTACGTCCCCCAATTAGCGAAGAAAATCCACGATTACAACAAAGCATCGTCCCATCCCATCATTAATCTTAAAGGATTCATG

Basic information

species Vitis vinifera
transcript Vv11s0037g00320.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351027932|gb|FQ425833.1|FQ425833
EST:     CCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG                         GTCATTACGTCCCCCAATTAGCGAAGAAAATCCACGATTACAACAAAGCAT
genomic: CCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTGgtaaccaaaa ... tgcaatttagGTCATTACGTCCCCCAATTAGCGAAGAAAATCCACGATTACAACAAAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattgtttacttaatgatcacaagtttaacccacaaaattttattgcaatttagGTCATTACGTCCCCCAATTAGCGAAGAAAATCCACGATTACAACAAAGCATCGTCCCATCCCATCATTAATCTTAAAGGATTCATG
                        gtttaac  putative branch site (score: 3)
                                       ttttatt  putative PPT
                                 acaaaattttattgca  TA-rich tract