1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacagtccactgttttaaagaagctactttagttccttgagaaaattctatttttggatgggtctcatgttaagagtcccctatgttgtctgtcactgtgtttatgcttcattaccttcatacattgttgtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
species | Vitis vinifera |
transcript | Vv11s0016g04970.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCCEST: gi|110387459|gb|EC952124.1|EC952124
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCCEST: gi|110689922|gb|EE066580.1|EE066580
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCCEST: gi|33401973|gb|CF207600.1|CF207600
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCCEST: gi|161714699|gb|FC064483.1|FC064483
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCCEST: gi|351034937|gb|FQ458294.1|FQ458294
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCCEST: gi|33402755|gb|CF208382.1|CF208382
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCCEST: gi|110728735|gb|EE104563.1|EE104563
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
EST: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG GGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
genomic: GATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAGgtacagtcca ... gtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
gttgtctgtcactgtgtttatgcttcattaccttcatacattgttgtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
tgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtccactgttttaaagaagctactttagttccttgagaaaattctatttttggatgggtctcatgttaagagtcccctatgttgtctgtcactgtgtttatgcttcattaccttcatacattgttgtgactgcagGGCTCCAATAGGACAAGATGATGAAGGAAAAATAAAATATGTCATTCGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA