1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agtgcctgtcacgtccacaaaaatgtaactgtaggcaccacccaaagtccacaatttcatctggcgagttaagagttgtgtgtttgtttgaatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCAAAAGCTGAGGGAGCTGGGGCTGGAGTTCATACCAGTGAAGCAGTGCCTC
species | Vitis vinifera |
transcript | Vv09s0070g00240.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCGTTGAAATTTTGGCCA-GTTTTTCCCGGAGTATCCCATTCCTACAAA GTGCTCAGATGAAGTGAAGCCAAGGGCCAAACCGTACAAGTTCTCTAACEST: gi|110385089|gb|EC949581.1|EC949581
genomic: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtc ... aatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAAC
EST: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAA GTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCAEST: gi|110372072|gb|EC936216.1|EC936216
genomic: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtc ... aatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCA
EST: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAA GTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCAEST: gi|110398867|gb|EC965343.1|EC965343
genomic: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtc ... aatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCA
EST: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAA GTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCAEST: gi|110685724|gb|EE062693.1|EE062693
genomic: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtc ... aatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCA
EST: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAA GTGCTCAGATGAAGTGAAGCCAAGGGGCAAACCGTACAAGTTCTCTAACCAEST: gi|110365510|gb|EC928612.1|EC928612
genomic: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtc ... aatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCA
EST: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAA GTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCAEST: gi|110383367|gb|EC947736.1|EC947736
genomic: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtc ... aatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCA
EST: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAA GTGCTCAGATGAAGTGAAGC
genomic: GTCGTTGAAATTTTGGCCAAGTTTTTCCCGGAGTATCCCATTCCTACAAAgtaagtcgtc ... aatgagacagGTGCTCAGATGAAGTGAAGC
agtccacaatttcatctggcgagttaagagttgtgtgtttgtttgaatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCAAAAGCTGAGGGAGCTGGGGCTGGAGTTCATACCAGTGAAGCAGTGCCTC
aatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgcctgtcacgtccacaaaaatgtaactgtaggcaccacccaaagtccacaatttcatctggcgagttaagagttgtgtgtttgtttgaatgagacagGTGCTCAGATGAAGTGAAGCCAAGGGCCAAGCCGTACAAGTTCTCTAACCAAAAGCTGAGGGAGCTGGGGCTGGAGTTCATACCAGTGAAGCAGTGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - cctgtca
- - - - - - -tccacaa
- - - - - - - - acaaaaa
- - - - - - - - - - - - - - - gtaggca
- - - - - - - - - - - - - - - - - - -ccaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt