Sequence
atgc intronic sequence ATGC exonic sequence...ggcacatgcatgaaggatattcatattgaggcttacaacttgtttcttttgttcatagactatatgaataatctgaaatttttatttttgtgttcttcagTTATGGCTATTCGAAGGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G065839_T01 (Zea mays), 3'ss of exon 4
ggcacatgcatgaaggatattcatattgaggcttacaacttgtttcttttgttcatagactatatgaataatctgaaatttttatttttg--tgttcttcagTTATGGCTATTCGAAGGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAAT
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ataatatccattagaca-accagtgatgggattaatattatacaactgcaatg-atgccttatgtcttgaattgacagatgttaatcctggcttttttgcagCTATGGTTATTCTAAGGAAAGATTTGTATGGTCTCTCATATCTGCAGTTGGAATATTTTGCTTGGGTTCCGGTGCTACAATTGTGCATGGAGTTCAAAAT
upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G23740.1 (Glycine max), 3'ss of exon 4
ggcacatgcatgaaggatattcatattgaggcttacaacttgttt--cttttgttcatagactatatgaataatctgaaatttttatttttgtgttcttcagTTATGGCTATTCGAAGGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAAT
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ttctatttcatgggatgaactgatatattgcttttgtctttgtgtgactttggaatttaatcggtatgttaaagtggcaatctgt-cttctat-ttctgcagTTATGGCTATTCCAAGGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATATTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAAC
upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 3
ggcacatgcatgaaggatattcatattgaggcttacaacttgttt--cttttgttcatagactatatgaataatctgaaatttttatttttgtgttcttcagTTATGGCTATTCGAAGGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAAT
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ttctatttcatgggatgaactgagatattgcttttgtgtttgtatgactttggagtttaactggtgtgttaaaatggcaatgtgtcttctttt--tctacagCTATGGCTATTCCAAGGAAAGATTTGTTTGGTCCTTGATATCTGCTGTTGGGATCTTTTGTCTTGGTTCTGGTGCCACCGTTGTTAATGGAGTACAGAAC
upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G51610.1 (Arabidopsis thaliana), 3'ss of exon 4
ggcacatgcatgaaggatattcatattgaggcttacaacttgtttcttttgttcatagactatatgaataatctgaaatttttatttttgtgttcttcagTTATGGCTATTCGAAGGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAAT
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-gtgagtctctctagtaatcttgtatactgtatggtagaacagaacagctttctcttgtttgaagaagta--cttagaccagccttttcactttgctcagCTATGGCTACTCAAAAGAAAGATTTGTATGGTCTTTGATATCTGCTGTTGGCATCTTTTGCCTTGGGTCTGGTGCTACCATAGTTAATGGAGTACAGAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttgttcatagactatatgaataatctgaaatttttatttttgtgttcttcagTTATGGCTATTCGAAGGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAAT
tttttgtgttcttc CT-rich tract
atagactatatgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggcacatgcatgaaggatattcatattgaggcttacaacttgtttcttttgttcatagactatatgaataatctgaaatttttatttttgtgttcttcagTTATGGCTATTCGAAGGAAAGATTCGTTTGGTCTCTGATTTCTGCCGTTGGTATATTTTGTCTTGGTTCTGGTGCTACAATTGTTCATGGAGTACAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- cacatgc
- - - - - -gaaggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaataa